Protein

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Genbank accession
QIS79297.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TF
Evidence RBPdetect
Probability 0,87
Protein sequence
MLRPKLGRIWADGSSVARRDPGDTKYVTGWLSEIPTYQVLNFLQWKNDLIIQALAERGVLEWGGDVTYKKGAAVWDETNNKMYVALLDNPDKTKAPSTNSAQWTGSALQLSRSAYDATVKKIDDHVADVTGNPHKLTPGRLGTYTVSQIDALVAQYRTEVQTHASRKDNPHSVTATQIGAVPVEGGTYTGDVTMGTGQIFLSADKTRLIKSDSTGVYMKNAAGAVGIDAAGKGFVKIGSAAPSEIITQNTFADNKQTVEPSYAPPKELFYMPLIRDINIYVGGGTADSAVTPQYDQYGRFAFPQQLEKTVQLSAPPVVGASDVTVAADIAWIGSYKQTAKSIYSVGVGGIGRARLYVTCNGTVGAYGDSQAVTSGAMDDGKTHRFVIRRTATKVALFIDGVLFNEITTTNAAIDTYPNILETLSGSTPQELVPVSICNVRVFAGALTDNQISVL
Physico‐chemical
properties
protein length:454 AA
molecular weight: 48634,23230 Da
isoelectric point:6,54105
aromaticity:0,08150
hydropathy:-0,17026

Domains

Domains [InterPro]
DC_0782
STR
12–446
DC_0782
G3DSA:2.60.120.200
STR
307–453
G3DSA:2.60.120.200
IPR013320
STR
322–453
IPR013320
PF13385
LEC
340–452
PF13385
QIS79297.1
1 454
Architecture
STR
STR 12-453 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Pantoea phage vB_PagM_SSEM1
[NCBI] 		2721760 Uroviricota > Caudoviricetes > Chaseviridae > Loessnervirus > Loessnervirus SSEM1
Host Pantoea agglomerans
[NCBI] 		549 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QIS79297.1 [NCBI]
Genbank nucleotide accession
MT230534.1 [NCBI]
CDS location
range 50392 -> 51756
strand +
CDS
ATGCTCCGTCCAAAACTTGGGCGCATTTGGGCTGATGGCTCAAGTGTAGCTCGTCGCGACCCAGGCGACACAAAATATGTCACTGGTTGGTTGTCTGAGATTCCTACTTATCAGGTTCTCAACTTCCTCCAGTGGAAGAATGATTTAATCATTCAGGCTTTGGCTGAACGTGGTGTTCTGGAGTGGGGCGGTGACGTAACCTATAAGAAAGGTGCTGCGGTTTGGGATGAAACAAACAACAAAATGTATGTTGCTTTGTTGGACAATCCAGACAAAACCAAAGCGCCCTCAACCAACTCTGCTCAGTGGACTGGCTCAGCACTTCAACTTTCCCGCTCTGCATATGATGCAACGGTTAAGAAGATTGATGACCATGTTGCTGATGTAACTGGTAACCCGCACAAACTTACTCCGGGACGTTTGGGAACTTACACAGTTTCTCAAATTGATGCTTTGGTTGCTCAGTATCGTACCGAAGTTCAAACACATGCCAGCCGCAAAGATAACCCACACAGTGTAACTGCTACTCAGATTGGTGCTGTACCTGTTGAAGGTGGTACTTATACTGGCGATGTTACAATGGGCACTGGTCAAATCTTCCTGTCTGCCGATAAGACTCGTTTAATCAAGTCTGACTCAACTGGCGTGTACATGAAGAATGCTGCTGGTGCTGTTGGTATTGATGCTGCTGGTAAAGGTTTCGTCAAGATTGGTTCTGCTGCACCATCTGAGATTATCACTCAGAATACGTTTGCAGATAATAAGCAAACTGTTGAACCAAGTTATGCTCCACCAAAAGAATTATTTTATATGCCGTTGATTCGGGATATTAATATTTATGTTGGTGGCGGGACTGCTGATAGTGCTGTGACTCCACAGTATGACCAATATGGTCGATTCGCATTTCCACAGCAACTTGAGAAAACTGTTCAGCTTTCTGCTCCTCCTGTTGTTGGTGCAAGTGATGTAACTGTTGCTGCTGACATTGCATGGATTGGCTCTTACAAGCAAACAGCCAAATCAATTTATTCTGTTGGTGTTGGTGGTATTGGACGTGCTCGCTTGTACGTTACTTGCAATGGAACAGTTGGTGCATATGGCGACAGTCAGGCGGTAACATCTGGTGCAATGGATGATGGTAAGACACATCGGTTTGTTATTCGAAGAACTGCGACGAAAGTTGCTCTGTTTATTGATGGTGTTCTCTTCAATGAAATCACCACAACCAATGCTGCCATTGACACTTATCCAAACATTCTTGAAACTCTTTCTGGTTCAACTCCACAAGAGTTAGTTCCTGTTTCAATTTGTAATGTCCGTGTGTTTGCCGGTGCATTAACCGACAATCAAATCTCAGTTTTATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
c04a8ad8999411957fbd76ce452b1399a20e45c04c1e0adcca177a495766c058
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7559
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of Pantoea agglomerans bacteriophage vB_PagM_SSEM1 Truncaite,L., Alijosius,L., Petrauskaite,E. and Simoliunas,E. 2012-05 — GenBank