Protein

View in Explore
Genbank accession
WDQ27572.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,83
Protein sequence
MSKIKVNEIEAATGSTVTIPTGQTFSVTDGIPATNLSGTIADARLPTVPVTKGGTGLTSLGSAGQAVKVNSAGNALEFGAVAGGKVLQVKNVATNQSGVTTNTAWTDTGMSLAITPSATSSKILIMVSGTIAGAQTTYSSGCAVMRGTTTLGGGDNGRYANGGCVDHWAATDNNYHKEHWAFNFLDTPNTTSATTYKVVFASGYTNNDGGAAYWLRNQADDDHFDDIGSMTLIEIGA
Physico‐chemical
properties
protein length:237 AA
molecular weight: 24240,52120 Da
isoelectric point:5,21125
aromaticity:0,06751
hydropathy:-0,10295

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WDQ27572.1
1 237
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,6574
Central domain 11 206 197 0,0301
C-terminal 207 237 30 0,9995
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-206
C-terminal
207-237

Taxonomy

  Name Taxonomy ID Lineage
Phage Pelagibacter phage EXVC031P Hodr
[NCBI] 		3029570 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Candidadtus Pelagibacter sp. HTCC1062
[NCBI] 		198252 Pseudomonadota > Alphaproteobacteria > Candidatus Pelagibacterales > Candidatus Pelagibacteraceae > Candidatus Pelagibacter >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WDQ27572.1 [NCBI]
Genbank nucleotide accession
OQ414635.1 [NCBI]
CDS location
range 23634 -> 24347
strand -
CDS
ATGTCAAAAATTAAAGTTAATGAGATAGAAGCGGCTACTGGTTCAACTGTAACTATTCCAACTGGTCAAACATTTTCAGTTACAGATGGAATACCAGCTACAAATTTATCTGGTACAATTGCTGATGCAAGATTGCCAACAGTACCAGTAACTAAAGGTGGTACTGGATTAACTTCATTAGGTAGTGCTGGACAAGCAGTTAAGGTTAATAGTGCTGGTAATGCTTTAGAGTTTGGTGCTGTTGCTGGTGGAAAAGTATTACAAGTAAAAAATGTAGCAACTAATCAATCTGGAGTAACAACAAACACAGCTTGGACAGATACTGGTATGTCATTAGCTATAACTCCGAGTGCTACATCTAGTAAAATTTTAATTATGGTAAGTGGTACAATAGCTGGAGCGCAAACAACTTATAGTTCTGGATGTGCAGTTATGCGAGGAACAACTACACTAGGAGGTGGCGACAATGGGAGATATGCTAATGGTGGGTGTGTAGATCATTGGGCGGCTACTGATAATAATTATCATAAAGAACATTGGGCTTTTAATTTTTTAGATACTCCAAACACAACTTCTGCAACAACATATAAAGTAGTTTTTGCATCTGGTTATACAAATAATGATGGTGGAGCCGCTTATTGGTTAAGAAACCAAGCAGATGATGATCACTTTGATGATATTGGTTCAATGACTTTAATAGAAATAGGAGCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
faa4ff86c8163e67b8f61473d46ee133dc6b44eb5117e1941d2af5460edb99f1
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7857
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Draft Genome Sequences of Pelagipodophages Hodr EXVC031P and Baldr EXVC032P, Isolated from the Sargasso Sea Lewis,P.J., Buchholz,H.H., Michelsen,M.L. and Temperton,B. 2014-05 — GenBank