Protein

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Genbank accession
YP_010662234.1 [GenBank]
Protein name
tail fiber protein host specificity
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,63
Protein sequence
MTLPTIGPISLDDIATEFSLPLPVSMTDLYGIAVGIPTTGEISLSMFRGKGINIEKIVMSSTQNLILSSLFTNEELNSPLDKRVFIDPGVSIGSLNPAIPAMQSGIFLGNLTIENYGSVLGAGGSGGTEGSPGTNGGDAIVLDIPGVVIENYGFIRGGGGGGGSGGKGGDGGDGIYSFIRRDPKEGSAYSRAVPKFYVYEYRFNGVLGNVQWFWNDIQVSNAFSNDFVQVGTIKYFKGDQRSYQRKENVGSIQEYSYYSIHQEYPISYDTDGGLGGDYKGTFSDGGQGQGYLRSLSKGNQGLIGEPGGTNAGRGGDGGHGGDGGTWGIPGNAGSAGQNGTDGNISAGTVGQSGFAGGDAGRAVTSSQIYTVNNFGTIDGSY
Physico‐chemical
properties
protein length:381 AA
molecular weight: 39340,73510 Da
isoelectric point:4,57874
aromaticity:0,09974
hydropathy:-0,26378

Domains

Domains [InterPro]
DC_1679
STR
1–210
DC_1679 DC_0422
IPR007932
RBD
111–165
IPR007932
YP_010662234.1
1 381
Architecture
STR
RBD
STR 1-210 | RBD 211-381
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010662234.1
1 381
Domain Start End Length (AA) Confidence
N-terminal 1 100 100 0,8199
Central domain 101 370 271 0,9635
C-terminal 371 381 10 0,2302
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-100
Central
101-370
C-terminal
371-381

Taxonomy

  Name Taxonomy ID Lineage
Phage Rhizobium phage AF3
[NCBI] 		2763529 Uroviricota > Caudoviricetes > Pootjesviridae > Innesvirus AF3 >
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010662234.1 [NCBI]
Genbank nucleotide accession
NC_070887.1 [NCBI]
CDS location
range 37460 -> 38605
strand -
CDS
GTGACTCTTCCGACAATCGGTCCTATCTCTCTAGACGATATCGCTACAGAGTTCAGTCTTCCACTTCCTGTGAGCATGACTGATCTGTACGGTATCGCTGTCGGCATTCCTACGACCGGTGAGATCTCTCTGAGCATGTTCAGAGGCAAAGGCATCAACATCGAAAAGATCGTGATGTCTTCAACTCAGAACCTCATCCTGTCTTCGCTGTTTACGAACGAAGAATTGAACTCTCCTCTCGACAAGCGTGTGTTCATCGATCCGGGAGTTTCGATCGGCTCACTGAACCCTGCTATTCCTGCTATGCAGTCTGGAATCTTTCTCGGCAACTTGACGATCGAGAACTACGGAAGCGTTCTCGGTGCTGGTGGATCTGGCGGAACAGAAGGTTCTCCTGGAACGAACGGCGGCGATGCTATCGTTCTTGACATCCCTGGTGTCGTCATCGAGAACTACGGTTTCATCCGTGGCGGCGGTGGCGGTGGTGGATCTGGCGGCAAAGGCGGCGACGGAGGTGATGGCATCTACTCGTTCATTCGTCGTGATCCGAAGGAAGGAAGCGCGTACTCCCGCGCTGTTCCGAAGTTCTACGTCTACGAGTATCGCTTCAACGGCGTTCTCGGTAACGTTCAGTGGTTCTGGAATGACATCCAGGTCTCGAACGCTTTCTCTAACGACTTCGTCCAAGTCGGCACCATCAAGTACTTCAAAGGTGACCAGAGATCTTATCAGCGGAAAGAGAACGTTGGTTCGATCCAGGAGTACTCTTACTACTCGATCCATCAGGAATATCCGATCTCGTATGACACGGATGGTGGACTCGGCGGTGACTACAAAGGAACGTTCTCCGACGGTGGTCAAGGCCAAGGATATCTGCGTTCGCTGTCTAAAGGCAATCAAGGTCTCATCGGCGAACCTGGTGGTACGAACGCTGGACGCGGCGGTGACGGCGGTCATGGCGGTGACGGCGGCACATGGGGAATTCCAGGTAATGCTGGTTCTGCTGGACAAAACGGCACTGACGGGAACATTTCTGCTGGAACTGTAGGCCAGAGCGGTTTTGCTGGCGGAGACGCTGGTAGAGCTGTCACCTCGTCCCAAATATACACTGTAAACAATTTCGGCACGATCGATGGAAGTTACTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
b06b163fed75244b231be6156a640ea35e8038aef367a67ec0856cbccaa09201
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7093
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of Rhizobium leguminosarum bacteriophage vB_RlegM_AF3 Gunathilake,D., Mackenzie,K.D., Yost,C.K. and Hynes,M.F. 2020-03-12 — GenBank