Protein

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Genbank accession

YP_010582526.1 [GenBank]

Protein name

tail spike protein

RBP type

TSP

Evidence UniProt/TrEMBL

Probability 1,00

Evidence GenBank

Probability 1,00

TSP

Evidence DepoScope

Probability 1,00

TSP

Evidence RBPdetect

Probability 0,91

TSP

Evidence RBPdetect2

Probability 0,95

Protein sequence

MSSGCGDILTLNDLQIAKKHQLFEAEVITGKSGGVAGGEDIDYATNQVTLQTQKTLPAVLRDAGFRPASFNFTTGGTLGENDADKAVLWPKDDGGDGNYYVWRGSLPKIIPASSTPLTTGGVSDSAWVAFGDVTLRTELDEKFTNGTFNAGVNYKYKLPASVSGAVFRTLQSRLDDSVHVKDFGAVGDGVTDDTVAIQAAINSGARRIDYSNGTYLVTAGTLTCVSDQTHFGDGAKLVHNSTTLGYSIFNAFEQSNLKFIGLVFSGPSSQTNAINCVSCNTVLVSECVTTNIGLFSCKSRKAPNPFVAHDVTGAYPLVTEAADYNYFITVTGCRASGDGTGVPGGPFKVAAIYLSYVRYATITGNAINGHKEGVQWWGGDANSAAGDGAISNPRKCSNISVVSNSVIDTVGGIWGSMGQDIAVSGNTVRDCKDVCIDFEGCFDCTATGNTTANATHGCLTAVFTNRNIIFSGNTAHISLGNNSVIGGVYNSLADTNNFSVSFVGNTFSNDVSISFLKIEGVQNIIIENNFFNNVYLDTGSYAAGDTRRYEEVSGNSMWFTAGGSGFSYSAMIVGNTTINGTSRISGNIINGLSIATNQFGILAQQTKANNTAQQMLITGNTVRGFVNDLIISAPQIPISGRHLFSIQGNLFNTGGTNVAASSSNIVQANNYKADASPISF

Physico‐chemical properties

protein length:	680 AA
molecular weight:	71422,42980 Da
isoelectric point:	5,16618
aromaticity:	0,09118
hydropathy:	-0,04074

Domains

Domains [InterPro]

DC_1596
STR
1–350

DC_1596 IPR039448 IPR006626 IPR006626

G3DSA:2.10.10.80
ATT
66–141

G3DSA:2.10.10.80 IPR011050 DC_1835

IPR040775
RBD
71–132

IPR040775 IPR012334

IPR024535
ENZ
178–220

IPR024535 IPR006626 IPR006626 IPR006626

DC_1312
RBD
368–501

DC_1312

YP_010582526.1

1 680

Architecture

STR

ATT

STR

RBD

STR 1-65 | ATT 66-141 | STR 142-537 | RBD 542-680

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Domains [InterPro]

Domain ID	Category	Cluster	Start	End	Layer	Name	Pref Zone	Confidence	Evidence	Support
DC_1596	STR	DC_1596	1	350	Novel HMM	DC_1596	Central	Low	Positional only	84 proteins / 84 hits
G3DSA:2.10.10.80	ATT	G3DSA:2.10.10.80	66	141	Merged direct domain	G3DSA:2.10.10.80	N-terminal	Low	Positional only	383 proteins / 383 hits
IPR040775	RBD	DC_0821	71	132	InterPro cluster	Tail spike TSP1/Gp66, N-terminal domain	Central	High	Text match	1281 proteins / 1285 hits
IPR011050	STR	IPR011050	176	537	Merged direct domain	Pectin lyase fold/virulence factor	Central	Low	Positional only	572 proteins / 572 hits
IPR012334	STR	IPR012334	178	514	Merged direct domain	Pectin lyase fold	Central	Low	Positional only	867 proteins / 867 hits
IPR024535	ENZ	DC_0410	178	220	InterPro cluster	Rhamnogalacturonase A/B/Epimerase-like, pectate lyase domain	Central	High	Text match	420 proteins / 426 hits
IPR006626	Unmapped	-	325	356	InterPro	Parallel beta-helix repeat	-	-	-	-
IPR039448	ENZ	DC_0799	350	474	InterPro cluster	Right handed beta helix domain	C-terminal	High	Text match	178 proteins / 183 hits
IPR006626	Unmapped	-	357	378	InterPro	Parallel beta-helix repeat	-	-	-	-
DC_1312	RBD	DC_1312	368	501	Novel HMM	DC_1312	C-terminal	Low	Positional only	37 proteins / 37 hits
IPR006626	Unmapped	-	418	440	InterPro	Parallel beta-helix repeat	-	-	-	-
IPR006626	Unmapped	-	521	570	InterPro	Parallel beta-helix repeat	-	-	-	-
DC_1835	RBD	DC_1835	542	680	Novel HMM	DC_1835	C-terminal	Low	Positional only	1 proteins / 1 hits
IPR006626	Unmapped	-	584	605	InterPro	Parallel beta-helix repeat	-	-	-	-

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout

N-terminal

Central

C-terminal

YP_010582526.1

1 680

Domain	Start	End	Length (AA)	Confidence
N-terminal	1	192	192	0,9896
Central domain	193	669	478	0,9867
C-terminal	670	680	10	0,5856

Note: Constraints were applied during segmentation.
C-terminal too short, adjusted boundary

Legend: N-terminal Central domain C-terminal

3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring

N-terminal
1-192

Central
193-669

C-terminal
670-680

Taxonomy

	Name	Taxonomy ID	Lineage
Phage	Salmonella phage Shemara [NCBI]	2596714	Uroviricota > Caudoviricetes > Sarkviridae > Cornellvirus > Cornellvirus shemara
Host	Salmonella enterica [NCBI]	28901	cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Genbank protein accession

YP_010582526.1 [NCBI]

Genbank nucleotide accession

NC_069152.1 [NCBI]

CDS location

range 22059 -> 24101
strand +

CDS

ATGTCTAGCGGTTGCGGCGATATTTTAACACTTAACGATTTGCAAATAGCTAAAAAACATCAGCTTTTCGAAGCCGAGGTCATCACCGGTAAATCAGGGGGCGTTGCCGGCGGTGAGGATATTGACTATGCGACAAATCAGGTGACGTTACAGACACAAAAGACGTTACCTGCGGTTCTGCGAGATGCGGGCTTTAGGCCTGCATCGTTTAACTTCACTACGGGCGGTACTCTCGGTGAAAACGACGCCGATAAAGCAGTCCTTTGGCCAAAAGATGACGGAGGGGACGGCAACTATTACGTATGGAGAGGGTCATTACCTAAAATAATACCAGCGTCCTCCACGCCACTAACTACTGGTGGAGTATCTGATTCTGCGTGGGTAGCGTTCGGGGACGTAACACTACGCACCGAGCTGGACGAAAAATTTACAAACGGAACATTTAACGCTGGAGTTAATTATAAATATAAACTTCCCGCCTCCGTGTCTGGTGCCGTTTTCAGGACTTTGCAGTCCCGGCTGGACGACTCAGTTCACGTTAAAGATTTTGGTGCTGTTGGCGACGGTGTCACAGATGATACCGTTGCAATACAGGCGGCCATAAACTCAGGAGCCAGAAGAATCGACTACTCAAACGGAACTTATCTGGTCACTGCGGGCACTTTGACGTGCGTTAGCGACCAAACACATTTCGGCGACGGCGCGAAGTTGGTCCACAATTCGACGACGTTAGGCTATTCAATTTTTAATGCGTTTGAGCAATCTAACCTTAAGTTTATAGGCCTTGTATTTTCAGGCCCATCAAGCCAAACGAACGCGATTAATTGTGTCTCGTGTAACACTGTGCTTGTCTCCGAGTGCGTAACAACTAATATTGGTCTTTTCTCATGTAAAAGCAGAAAAGCGCCAAACCCTTTCGTAGCCCACGACGTCACAGGTGCGTATCCTTTAGTAACTGAGGCAGCAGATTATAATTATTTTATAACTGTAACGGGTTGCCGTGCGTCCGGTGATGGGACTGGCGTTCCTGGCGGTCCTTTTAAAGTGGCGGCCATTTATCTGTCTTATGTACGATACGCTACGATAACGGGTAACGCCATAAACGGGCATAAAGAAGGCGTACAGTGGTGGGGTGGCGACGCCAACAGCGCAGCAGGAGACGGCGCGATTAGCAACCCGCGCAAGTGCTCTAATATCTCGGTAGTAAGTAACTCCGTTATAGACACAGTTGGGGGTATTTGGGGTTCTATGGGGCAAGATATTGCAGTATCGGGTAATACCGTAAGAGACTGCAAAGACGTCTGCATTGACTTCGAAGGGTGTTTTGATTGCACGGCAACAGGTAACACTACTGCTAACGCGACACACGGCTGCTTGACGGCTGTTTTTACTAACAGAAACATTATTTTCTCAGGAAACACGGCGCACATATCCCTTGGAAACAACAGCGTTATAGGCGGAGTGTACAACTCTTTAGCGGATACGAATAATTTTAGCGTAAGTTTCGTCGGCAACACTTTCAGTAATGATGTATCTATTAGTTTCCTTAAAATAGAAGGGGTTCAAAACATCATTATTGAGAATAATTTCTTCAATAACGTCTATCTTGACACAGGTTCTTATGCTGCCGGAGATACCAGACGTTATGAGGAAGTGTCGGGCAATAGTATGTGGTTTACCGCAGGAGGCTCCGGGTTTTCTTATAGCGCGATGATTGTCGGAAACACGACCATAAATGGCACTTCCCGTATTTCAGGAAATATTATAAATGGCTTGTCAATAGCCACAAATCAGTTTGGAATTCTTGCGCAACAGACGAAAGCCAATAACACAGCACAGCAAATGCTCATCACTGGCAATACTGTTAGAGGCTTTGTTAATGACTTAATTATAAGTGCTCCCCAAATTCCAATATCCGGGCGACACTTATTCTCTATTCAAGGGAATTTGTTTAACACCGGTGGCACCAATGTTGCGGCGTCAAGCTCTAACATCGTGCAGGCAAATAACTACAAAGCAGATGCATCACCTATATCTTTCTAA

Genome Context

Tertiary structure

PDB ID

9342e34423fbce7e156f4e0501f25024f1af1da798e57dc2ffad3a80749ccfa5

ESMFold

Source ESMFold

Method ESMFold

Resolution 0,8112

Oligomeric State monomer

Download PDB

Model Confidence

Very high
pLDDT > 90

High
90 > pLDDT > 70

Low
70 > pLDDT > 50

Very low
pLDDT < 50

Protein

Domains

Domains [InterPro]

Domains [InterPro]

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

3D Structure with Domain Coloring

Domain Coloring

Taxonomy

Coding sequence (CDS)

Coding sequence (CDS)

Genome Context

Genome Context

Tertiary structure

Predicted Aligned Error (PAE)

Model Confidence