Protein

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Genbank accession
XXJ63386.1 [GenBank]
Protein name
tail collar fiber protein
RBP type
TF
Evidence RBPdetect
Probability 0,91
Protein sequence
MSKGTQIFNHVIDDAGTVTVEVAGTAFEGQTGGNDDLQTCLELIQEHALSPIPDYPVASTTVAGITLLSDETAVSNPANDTSAVTPYALNYWMENHSTATEVQYGFVKIITETTIDTVSPSAPVEAAQSHAFTLKTLNYALNNRFHATESAPGAVRLATSAQATTTGSLSSTVAMTPQRVKQMLDVWANTTASDASESTKGLIRLANGTEVNSTSASEDNLAISPYRFNFRTATTTRKAGFYLPDATVANARSSNDHAVTVGTLSLFSANSSRVGVAKVANNLTTNDPLQALSAAMGYKLNNEKIGAPGGTINGTLKVNNIQSVSGTQLMQNGLIASRAMLNMYPVGAVYMSLVSTSPATLFGGTWTRLAQGRVLVSEGSYGGRTFNIRQTGGEYEVTLTEATIPSHKHAGWGEHHDGNGVGFGVAYQYGRNNPGSRKTDRDNYLYYTSPVGGNQAHNNIQPYYTVYMWERTA
Physico‐chemical
properties
protein length:473 AA
molecular weight: 50344,16440 Da
isoelectric point:5,88297
aromaticity:0,07822
hydropathy:-0,27400

Domains

Domains [InterPro]
DC_0176
STR
1–450
DC_0176
IPR054500
STR
279–303
IPR054500 SSF88874
IPR053827
ATT
343–472
IPR053827
IPR044916
STR
374–466
IPR044916
XXJ63386.1
1 473
Architecture
STR
ATT
STR 1-342 | ATT 343-472 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage QD01
[NCBI] 		3440539 No lineage information
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XXJ63386.1 [NCBI]
Genbank nucleotide accession
PV785814 [NCBI]
CDS location
range 211163 -> 212584
strand +
CDS
ATGAGTAAAGGAACTCAAATTTTCAACCACGTGATTGATGATGCGGGTACGGTTACAGTCGAAGTTGCTGGTACTGCCTTTGAAGGGCAGACTGGCGGCAATGATGATCTTCAGACGTGTCTTGAATTGATCCAAGAACATGCGCTGTCACCTATCCCAGATTATCCAGTCGCATCGACTACAGTCGCGGGTATTACATTACTAAGCGACGAAACAGCAGTGTCAAACCCAGCCAATGATACGAGCGCGGTAACTCCGTATGCGCTTAATTACTGGATGGAAAATCACTCGACTGCAACTGAAGTTCAGTATGGTTTCGTTAAAATCATCACCGAAACTACGATTGATACAGTTTCGCCGTCTGCGCCAGTTGAAGCAGCACAGAGTCACGCATTCACACTGAAGACGCTGAACTATGCATTGAACAACCGCTTCCATGCGACTGAATCTGCACCGGGTGCAGTGCGTCTAGCGACATCAGCACAAGCTACCACTACAGGTTCGTTATCGTCAACTGTAGCAATGACTCCTCAGCGAGTCAAGCAAATGCTCGACGTATGGGCTAACACTACAGCATCAGACGCTTCGGAATCTACAAAGGGTTTGATTCGTTTAGCAAACGGGACAGAAGTTAACAGCACTTCAGCTAGTGAAGATAATCTTGCAATCTCGCCGTATCGTTTTAACTTCAGAACAGCAACGACAACTAGAAAAGCGGGTTTTTATCTACCAGACGCGACAGTTGCGAATGCTCGTTCATCGAACGATCACGCTGTGACAGTCGGTACGTTGAGTTTATTCAGCGCGAATAGTTCACGTGTGGGTGTAGCAAAGGTTGCAAACAACTTAACAACAAATGACCCGTTGCAAGCACTTAGTGCAGCTATGGGATATAAGCTGAATAATGAAAAGATTGGTGCACCTGGCGGTACAATAAACGGAACGCTGAAAGTAAATAACATTCAGTCAGTTTCTGGCACTCAATTAATGCAGAATGGTTTGATTGCGTCTAGAGCTATGCTGAACATGTATCCAGTCGGTGCAGTTTACATGTCTCTAGTGTCAACATCACCTGCAACATTATTTGGTGGCACATGGACTCGTTTAGCACAAGGTCGCGTTCTTGTTTCAGAAGGGTCATATGGTGGCAGAACATTCAACATCCGTCAAACTGGCGGTGAATATGAAGTTACTCTAACCGAAGCAACAATCCCGTCTCACAAACACGCGGGTTGGGGTGAACATCACGACGGAAACGGTGTAGGATTTGGTGTAGCTTATCAGTACGGGCGTAATAACCCGGGTTCTCGTAAGACTGACCGAGACAACTACTTGTACTACACATCACCAGTTGGTGGTAACCAAGCGCACAACAACATTCAGCCGTATTACACTGTTTACATGTGGGAAAGAACTGCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
d9f9991cde810bf763a92d7894a3056bfb02c14c55b3dbc8654a3f903a735813
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,6327
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete Genome Sequence of Vibrio natriegens Bacteriophage QD01 Zhu,L. and Zhu,D. 2015-12 — GenBank