Protein

View in Explore
Genbank accession
AGH56451.1 [GenBank]
Protein name
central tail fiber J
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,84
Protein sequence
MGRVNVANLQGNSPDFRVTVDSGSTLNTQADVRIIGQSYHPIPTPPSNAFAKTFSPLYPFTGVNNTDGTSLLAPWGTSAVRSTTSADPSVTDSPVGGVPLKMQMDGSNDPYTSTYNNATWNIVEARAGEQWTFSVYVKSNQSGGINAQLFLFEARADGTYSTYNEQVFNNIGTSWQRISITRTFNQSDTAHLQVRVDGSDSGNANSHVLWWSGFQVNRGPLQDFTPDYRIDQTEYATHDQTGYIRYNTTEKRIEVKDTNLVWDAAAGSASAAGNFPLGSVGPGGGFTVGEGANDTSHQGFTHNGMRILHEGLRYNDGQAGDETLGATGNTRPFLDYISSTSGSDFAFHTGHTNPGNVSWPQYLAINVSERRYGQVLNRVRWYKHANAIGNCNIWGTNREVDRNNFTDTATNWTFLDRVHFGGSGSGSEGGQRSQNFSNTNGYRWYMIEMVDINSSALAYPNVGSRGGWAMYGVTFDNT
Physico‐chemical
properties
protein length:478 AA
molecular weight: 52234,11590 Da
isoelectric point:5,53733
aromaticity:0,11506
hydropathy:-0,58536

Domains

Domains [InterPro]
G3DSA:2.60.120.260
STR
63–218
G3DSA:2.60.120.260
DC_2119
STR
97–195
DC_2119
AGH56451.1
1 478
Architecture
STR
STR 63-218 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AGH56451.1
1 478
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,6213
Central domain 11 209 200 0,1736
C-terminal 210 478 268 0,9350
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-209
C-terminal
210-478

Taxonomy

  Name Taxonomy ID Lineage
Phage Cyanophage Syn2
[NCBI] 		536473 Uroviricota > Caudoviricetes > Pantevenvirales > Pontusvirus > Pontusvirus syn19
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AGH56451.1 [NCBI]
Genbank nucleotide accession
HQ634190.1 [NCBI]
CDS location
range 141119 -> 142555
strand +
CDS
ATGGGTCGCGTAAATGTCGCAAATTTACAAGGCAATTCACCTGATTTCAGGGTAACTGTCGATAGTGGATCGACTCTGAATACGCAAGCAGATGTTCGTATTATAGGTCAGAGTTATCATCCTATCCCTACACCTCCTAGCAATGCATTTGCTAAGACGTTTAGTCCTTTGTATCCATTTACAGGTGTTAATAATACAGATGGAACATCTTTGTTAGCACCTTGGGGAACTAGTGCTGTACGATCAACAACTAGTGCTGATCCATCAGTAACAGATTCTCCTGTTGGTGGTGTGCCACTAAAAATGCAAATGGATGGAAGTAATGATCCTTATACTTCCACTTATAATAATGCTACATGGAACATTGTTGAGGCAAGAGCAGGAGAACAGTGGACGTTTAGTGTATATGTGAAATCAAATCAGAGTGGCGGCATCAATGCTCAGTTATTTTTATTTGAAGCAAGAGCAGATGGAACATATAGTACTTACAACGAACAGGTATTCAATAATATTGGAACATCTTGGCAAAGAATTAGTATAACAAGAACATTTAATCAAAGTGATACTGCACATCTACAAGTTCGTGTAGATGGTTCTGATAGTGGAAATGCAAACTCCCATGTTCTTTGGTGGTCTGGATTTCAAGTAAATAGAGGACCACTACAAGATTTTACTCCCGATTATAGAATTGATCAAACTGAATATGCTACTCATGATCAGACTGGATATATCAGATACAATACAACTGAGAAAAGAATCGAAGTAAAAGATACTAATTTAGTATGGGATGCTGCTGCTGGTTCTGCATCAGCAGCAGGAAATTTCCCTCTTGGATCTGTAGGACCAGGTGGTGGATTTACTGTTGGTGAAGGTGCGAATGATACTTCACATCAGGGATTTACTCACAATGGAATGCGAATATTACATGAAGGATTGAGATATAATGATGGACAAGCGGGTGATGAAACACTAGGTGCAACAGGAAATACTAGACCATTTCTTGACTATATTTCATCGACAAGTGGCAGTGATTTTGCATTTCACACGGGACATACTAACCCTGGTAATGTTTCTTGGCCGCAGTATCTTGCGATTAATGTATCCGAACGAAGATATGGTCAAGTGTTAAATAGAGTCAGATGGTATAAACATGCAAATGCCATTGGTAACTGCAATATTTGGGGAACCAATAGAGAAGTAGATCGAAATAATTTTACTGATACTGCTACTAATTGGACTTTCTTGGATCGTGTACACTTTGGAGGATCTGGTTCTGGTAGTGAAGGTGGTCAAAGATCTCAGAATTTCTCTAACACCAATGGTTATCGTTGGTATATGATTGAAATGGTTGACATTAATTCTTCTGCATTAGCATATCCCAATGTAGGCAGTAGAGGTGGATGGGCAATGTATGGAGTAACATTCGACAACACATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
39c46cbd590c85ff5f6fb841caf0af8b3ae519a97728ae9f04fe0b63823d8827
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6016
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Cyanophage Syn2 Henn,M.R., Sullivan,M.S., Osburne,M.S., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Yu,Q., Coleman,M.L., Huang,K.H., Weigele,P.R., DeFrancesco,A.S., Kern,S.E., Thompson,L.R., Fu,R., Hombeck,B., Chisholm,S.W., Haas,B., Nusbaum,C. and Birren,B. 2011-09-23 — GenBank