Protein

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Genbank accession
YP_006906388.1 [GenBank]
Protein name
base plate tail tube protein
RBP type
TSP
Evidence RBPdetect
Probability 0,89
Protein sequence
MIYPILRESRVVVEDRGRVFSFNALSTYSTSIAYEEYKTTRRTLHKRTNYSHSNIVAQEVSAISLQINFTDLGSESILFDWLGLEKEAGIFVLPKFSSNIEPKMVTIYITTEGGESVQFDNCFLSSIDFTLDKQIPVLIAGFESGKFSETSSPPHPSILQGGVAPFYPGSASSNGRQLPGFISAAISLQQQCSWRDNRSIHDIGTIYNRKRAYVNELNSSAIVALYYIKGSAGVDELLPEYAPITITNNNIQVDFPLARITKRLEFAEVFRVEYDIIPTENSDPVTITLRRNRND
Physico‐chemical
properties
protein length:295 AA
molecular weight: 33116,93690 Da
isoelectric point:5,52449
aromaticity:0,10508
hydropathy:-0,19288

Domains

Domains [InterPro]
IPR056389
ATT
1–292
IPR056389
YP_006906388.1
1 295
Architecture
ATT
ATT 1-292 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_006906388.1
1 295
Domain Start End Length (AA) Confidence
N-terminal 1 289 289 0,9342
Central domain 290 289 1 0,0868
C-terminal 290 295 5 0,9399
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-289
Central
290-289
C-terminal
290-295

Taxonomy

  Name Taxonomy ID Lineage
Phage Pectobacterium phage My1
[NCBI] 		1204539 Uroviricota > Caudoviricetes > Demerecviridae > Myunavirus > Myunavirus My1
Host Pectobacterium carotovorum subsp. carotovorum
[NCBI] 		555 Bacteria > Proteobacteria > Gammaproteobacteria > Enterobacteriales > Enterobacteriaceae > Pectobacterium

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_006906388.1 [NCBI]
Genbank nucleotide accession
NC_018837 [NCBI]
CDS location
range 97945 -> 98832
strand -
CDS
ATGATTTACCCTATTCTCAGAGAGTCTAGGGTCGTTGTAGAAGATAGAGGTAGGGTGTTTTCTTTTAATGCCCTATCTACTTACTCTACTTCAATAGCGTATGAAGAATACAAGACTACTAGACGTACCCTTCATAAAAGAACCAACTACTCTCACTCCAATATAGTAGCACAAGAAGTGAGCGCTATTAGTTTACAGATCAACTTTACTGATCTGGGTTCTGAAAGTATACTGTTTGACTGGTTAGGTTTAGAAAAAGAGGCAGGAATATTTGTTTTACCAAAATTCTCCTCTAATATAGAACCTAAGATGGTAACAATATACATAACTACAGAAGGTGGAGAGAGCGTACAGTTTGATAACTGTTTCTTATCTTCAATAGACTTTACCTTGGACAAGCAGATACCTGTCTTAATTGCAGGATTTGAATCAGGTAAATTTTCTGAAACATCTTCCCCACCCCATCCTAGCATCTTGCAGGGTGGAGTAGCACCGTTTTACCCAGGTTCTGCTTCCTCTAATGGCAGACAACTACCTGGATTTATTTCAGCAGCAATTTCTCTTCAACAGCAGTGTTCATGGAGAGATAATAGAAGTATCCATGATATAGGTACTATCTATAATAGGAAAAGAGCGTATGTAAATGAACTTAATAGTTCTGCTATAGTTGCTCTATACTATATTAAGGGTAGCGCAGGAGTAGACGAACTACTACCTGAATACGCCCCAATAACTATAACAAATAATAACATACAAGTGGATTTCCCACTTGCAAGAATAACAAAACGCCTAGAGTTCGCAGAAGTCTTTAGAGTAGAGTATGACATAATACCTACAGAAAATTCAGACCCTGTAACTATAACCTTACGGAGAAATAGGAATGATTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
adbb1dc1ac92a0dc0be4f76f63b23ebd65104d86cdeea1b3e7821518aa630ad3
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8143
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50