Protein

View in Explore
Genbank accession
QDF13636.1 [GenBank]
Protein name
S-layer protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MLPFGRMVKYGNIAPVPVVPTIKDFKIGFSHEVLLDSEGDVWGIGYNTAGQLGFLDANTNSIGMWSKIHENVRLIGVTTNYTVVVTNDNRILYAGNNLISSTTTLGWNDITSSMGAVVVDSIDALYCTDGMMHIKTADGSLYAYGRNMNANAGVTGVSGVISVATKVSGLPSAVKDIRYTFSYGTVLCQLDTTSVYGWGRNVNGELGQGNAAAVPTPSQRAGASIAIGTSYNATAIVSGTASLVTCGGQNDGQLGNGITTAGNVYTYGARAYPSDLNNIRSPVDCSTTYTSAFMSPDGIYYTGSNRSVFGGPSGAATVALYTKCSDLPILYSNITQWCSGTIGGAICSSTELYQCGTGRYIAGDGQNATRYGFRKTPLPWDVY
Physico‐chemical
properties
protein length:383 AA
molecular weight: 40254,65110 Da
isoelectric point:5,89849
aromaticity:0,09661
hydropathy:0,00522

Domains

Domains [InterPro]
DC_0433
ATT
1–112
DC_0433 IPR009091
IPR009091
STR
7–114
IPR009091
IPR009091
STR
15–219
IPR009091
IPR051553
Unmapped
22–260
IPR051553
QDF13636.1
1 383
Architecture
ATT
STR
ATT 1-112 | STR 113-376 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QDF13636.1
1 383
Domain Start End Length (AA) Confidence
N-terminal 1 218 218 0,0430
Central domain 219 372 155 0,5245
C-terminal 373 383 10 0,9256
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-218
Central
219-372
C-terminal
373-383

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage vB_EcoM_phAPEC6
[NCBI] 		2588085 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QDF13636.1 [NCBI]
Genbank nucleotide accession
MK817115 [NCBI]
CDS location
range 8132 -> 9283
strand +
CDS
ATGTTACCTTTTGGAAGAATGGTTAAGTACGGGAATATTGCACCAGTTCCAGTAGTTCCTACAATAAAAGATTTTAAGATTGGCTTTTCACATGAAGTGTTATTGGACAGTGAAGGTGATGTGTGGGGTATTGGATATAATACCGCTGGTCAGTTGGGATTTCTGGACGCTAACACAAATTCAATAGGAATGTGGTCTAAGATACATGAGAATGTTAGATTAATTGGCGTTACTACCAATTATACTGTAGTTGTTACAAATGATAATAGAATACTTTACGCCGGAAATAACTTAATTTCTAGTACTACAACGCTTGGGTGGAACGATATAACGTCTAGTATGGGAGCGGTTGTAGTGGATAGCATCGATGCATTATATTGCACAGATGGCATGATGCATATTAAAACTGCTGATGGTTCTTTATACGCATATGGACGTAATATGAACGCAAACGCTGGAGTTACTGGTGTTTCTGGAGTTATTAGTGTTGCAACTAAAGTTAGTGGTTTACCATCGGCTGTGAAAGATATACGATATACGTTTAGTTATGGTACAGTACTATGTCAATTAGATACCACCTCGGTATATGGATGGGGAAGAAATGTCAATGGTGAATTAGGTCAGGGGAACGCAGCCGCAGTTCCTACCCCATCCCAAAGGGCGGGTGCTTCTATTGCTATAGGTACTTCGTATAATGCTACTGCAATTGTTTCCGGTACTGCATCGTTGGTTACATGTGGTGGACAAAATGATGGTCAGTTAGGTAATGGTATTACTACTGCTGGTAATGTATACACATATGGTGCTAGAGCATACCCAAGCGATCTTAATAATATAAGAAGTCCAGTGGATTGCAGTACAACTTATACATCTGCATTTATGAGTCCAGATGGCATATATTACACGGGTTCGAACCGAAGTGTGTTTGGTGGTCCGAGCGGGGCTGCCACTGTTGCATTATATACCAAATGTAGTGATTTACCAATATTATATTCTAATATAACACAGTGGTGTAGTGGTACTATTGGTGGTGCGATATGTAGCAGTACTGAATTATATCAGTGTGGGACCGGTAGATACATTGCCGGAGATGGGCAGAACGCAACTAGGTATGGGTTTAGAAAGACACCATTACCTTGGGATGTTTATTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
c64e1c8e71895cc267cc93282fd1e5ca7f896481896fbdae44622e6347d5872a
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8699
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The 3D structure of jumbo coliphage phAPEC6 reveals an unusually high T = 28 triangulation number Tsonos,J., Wagemans,J., Holtappels,D., Hernalsteens,J.-P., De Greve,H., Estrozi,L., Bacia,M., Moriscot,C., Noben,J.-P., Schoehn,G. and Lavigne,R. 2020-04-28 — GenBank