Protein

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Genbank accession
QIQ66999.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
Protein sequence
MLGIFTSLLSSRSFSIVDQNTNQLVAADLRISRVNTRFSSVGQRHRLEDGTTKMDSRTIHPMEIIVEVFCPSIDVVDQINQLLLDRDTLYKVITRGMVFERMMCTSEALNQTPDMISATPARLTFSQVLVQNPKPIMFRNAGDSSMIDRGLALAEDVVGSAGDLFDYAVNGVQNAADLF
Physico‐chemical
properties
protein length:179 AA
molecular weight: 19849,50420 Da
isoelectric point:4,94649
aromaticity:0,06145
hydropathy:0,02570

Domains

Domains [InterPro]
DC_0601
STR
1–178
DC_0601
IPR054442
ATT
4–132
IPR054442
QIQ66999.1
1 179
Architecture
ATT
STR
ATT 1-132 | STR 133-178 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage shane
[NCBI] 		2719609 Uroviricota > Caudoviricetes > Lindbergviridae > Pbunavirus DP1 >
Host Pseudomonas aeruginosa PAO1
[NCBI] 		208964 Bacteria > Proteobacteria > Gammaproteobacteria > Pseudomonadales > Pseudomonadaceae > Pseudomonas

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QIQ66999.1 [NCBI]
Genbank nucleotide accession
MT119368.1 [NCBI]
CDS location
range 21908 -> 22447
strand +
CDS
ATGTTAGGTATTTTCACCAGCCTCCTAAGTTCGCGATCTTTTTCGATTGTGGACCAAAACACAAACCAGCTAGTTGCTGCGGATTTGAGGATAAGCCGGGTCAACACCCGGTTTTCTTCTGTAGGGCAACGCCACAGGCTGGAAGATGGCACGACCAAGATGGATTCCAGAACGATCCACCCTATGGAAATCATCGTCGAAGTATTTTGCCCTTCAATTGATGTCGTCGATCAGATCAATCAATTGCTCCTGGATCGCGACACTCTGTACAAAGTCATCACTCGCGGCATGGTATTCGAACGGATGATGTGTACCAGCGAAGCGCTCAATCAGACTCCGGATATGATATCGGCGACTCCTGCGCGGCTGACATTCTCCCAAGTTCTCGTCCAGAATCCCAAGCCTATAATGTTCAGAAATGCAGGGGACTCTTCTATGATCGACCGAGGGCTGGCCCTAGCTGAAGACGTGGTTGGCTCGGCCGGCGATCTGTTCGACTACGCAGTAAACGGCGTCCAGAACGCCGCAGACTTGTTCTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
6dcb413f7e693be2e882de014f34489179a075b4c00c02ae781030197fe8daed
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,6931
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A New High-Throughput Screening Method for Phages: Enabling Crude Isolation and Fast Identification of Diverse Phages with Therapeutic Potential Olsen,N.S., Hendriksen,N.B., Hansen,L.H. and Kot,W. 2020 — GenBank