Protein

View in Explore
Genbank accession
UYL04389.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MIQLTQPKGMVSKETNKEAIARVFGLKKRQVGYLSTSAAVDSYTILYDSATQTSWFRGSATGTPSSWTITNGVMVLVTSAGTFNLSLADLRQNLGSSDGAGLVGLSQGGFVSDAIKWVTPEMFGAVGDGVADDSDALQNAMNACVDFVWQGNVSDTDARGATVKYYLMLPGRYRFTRTMIIPPYLRMSGIAQSYLGDPTNNFTKFIPDFSMQDGYAFESLNLDQTGAHTAKVDSYSASASDRREITRCPGLLLENFSVVAGANTSLKGIFNFRLTHGAVLKSICARITSRAAVGANLTCTWNGAFRDCIFRTATIALTLRNNVTTWLFDNCYFQTTQGPNPLSWFTDFPEFYGYSTRQAWTACVAGSWSSPHFKDCTLENSQNGYRLHRCQGGSEHGTYFENIEEECYALMECVMSMTPGYFYNNKGAAATTRMVFLSGSPANSASIDMTNTNYFSQTVDPYNCPGSSKLVVKHAGDMRTRMKITYPNKVIFNCYSQFSGYCDIYISASGDDSYNGYSSSYPVKTLQEALLRCQPNYKNRIYIAAGNTVTTTKYYSDGYQPNSRFFENYDIQVVGDATTRPTLEIGEDPAWLSGIGIKNGRISFKNLNITLTLSSSTSAAAKAFGALVYVYGDCGVSFDNCTISGSDATYIPFLVSPAQKPGVVKLSLNSCSLSNMNIVQGSNISGFGLAYILNHDSCTFSSVAEGSTIAKIYSRAIA
Physico‐chemical
properties
protein length:718 AA
molecular weight: 78232,04490 Da
isoelectric point:7,38102
aromaticity:0,11699
hydropathy:-0,14610

Domains

Domains [InterPro]
G3DSA:3.30.2020.50
ATT
2–93
G3DSA:3.30.2020.50 IPR011050 DC_1757 IPR011050
IPR012334
STR
114–471
IPR012334 DC_0805
DC_2212
ATT
115–140
DC_2212
UYL04389.1
1 718
Architecture
ATT
ATT
STR
RBD
ATT 2-93 | ATT 110-140 | STR 141-696 | RBD 697-717 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
UYL04389.1
1 718
Domain Start End Length (AA) Confidence
N-terminal 1 132 132 0,9506
Central domain 133 491 360 0,9856
C-terminal 492 718 226 0,1975
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-132
Central
133-491
C-terminal
492-718

Taxonomy

  Name Taxonomy ID Lineage
Phage Klebsiella phage KP13-16
[NCBI] 		2985658 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Klebsiella pneumoniae
[NCBI] 		573 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
UYL04389.1 [NCBI]
Genbank nucleotide accession
OP617741 [NCBI]
CDS location
range 49050 -> 51206
strand +
CDS
ATGATCCAATTAACACAACCAAAAGGTATGGTCTCTAAGGAGACCAATAAAGAAGCAATAGCCCGAGTTTTCGGGCTTAAAAAGAGACAAGTTGGATATTTATCTACTTCAGCCGCAGTAGATTCATATACAATTTTATATGATTCAGCTACTCAGACTTCTTGGTTTAGAGGTTCAGCTACTGGAACCCCGTCAAGCTGGACTATCACAAATGGGGTAATGGTTTTAGTTACCTCAGCAGGGACTTTTAACTTAAGTCTTGCTGATCTTCGTCAAAACTTGGGTTCAAGTGACGGGGCTGGACTGGTTGGTCTTTCACAAGGCGGGTTTGTCAGCGATGCTATCAAATGGGTAACACCGGAGATGTTTGGTGCTGTTGGCGATGGTGTTGCTGACGATTCTGACGCACTACAAAACGCAATGAATGCTTGTGTTGATTTCGTATGGCAAGGAAATGTTTCTGATACTGATGCTCGCGGGGCAACTGTTAAATACTATTTGATGCTGCCAGGACGTTATCGTTTCACCAGAACTATGATAATTCCACCTTATCTCCGAATGAGTGGAATTGCACAATCTTATTTGGGTGATCCAACGAATAATTTCACAAAGTTCATTCCAGATTTTTCCATGCAGGATGGCTATGCATTTGAATCACTAAACCTTGATCAAACAGGTGCGCACACGGCAAAGGTTGATTCATATTCTGCCAGTGCGAGCGACAGGCGAGAAATCACGCGCTGCCCTGGGTTACTATTGGAGAATTTCTCCGTTGTTGCTGGGGCCAACACTTCCCTGAAGGGGATTTTCAATTTCCGCCTCACACATGGTGCAGTACTCAAGAGCATTTGTGCACGCATTACATCCCGAGCAGCAGTGGGGGCCAACCTCACCTGTACGTGGAATGGTGCATTCAGGGATTGCATTTTCAGGACTGCAACAATTGCTCTGACACTGAGAAATAACGTTACGACTTGGCTGTTTGATAACTGCTACTTCCAGACTACCCAGGGGCCAAACCCACTGTCATGGTTTACTGATTTCCCTGAATTCTATGGGTATTCAACAAGACAAGCCTGGACAGCTTGTGTGGCTGGGTCATGGTCGTCCCCACATTTTAAGGATTGCACACTAGAAAATTCTCAAAACGGTTACAGGCTTCACAGATGCCAGGGTGGTTCTGAGCACGGAACTTACTTTGAGAATATCGAAGAAGAATGCTACGCCCTCATGGAGTGCGTAATGAGTATGACCCCTGGTTATTTTTACAATAATAAAGGGGCAGCAGCTACCACACGCATGGTGTTTTTGTCAGGGTCTCCTGCAAACTCAGCAAGTATTGACATGACCAATACTAACTACTTTAGCCAGACTGTTGACCCATATAACTGTCCTGGTTCCAGTAAGTTGGTTGTAAAACACGCTGGCGATATGCGAACCAGGATGAAAATTACATACCCTAACAAGGTTATTTTTAACTGTTACTCTCAGTTTTCTGGTTATTGCGATATCTATATCTCGGCATCCGGTGATGACAGTTATAACGGGTATAGCTCAAGCTATCCAGTTAAGACATTGCAGGAAGCATTGCTTCGCTGCCAGCCAAATTATAAAAACAGGATTTATATTGCTGCTGGTAATACGGTAACAACAACCAAATACTACTCAGATGGCTACCAGCCAAACAGTAGGTTTTTTGAGAATTATGATATTCAGGTAGTTGGTGATGCCACAACAAGACCTACTCTAGAAATTGGAGAAGACCCAGCATGGTTGTCAGGAATTGGGATTAAAAATGGGAGAATTTCATTCAAAAATTTGAATATCACTCTCACCTTATCCTCATCAACAAGTGCCGCAGCAAAGGCATTTGGTGCTCTGGTTTATGTTTATGGTGACTGTGGGGTTTCGTTTGATAACTGTACAATATCAGGAAGTGATGCCACTTATATACCGTTCCTTGTTTCTCCTGCTCAGAAACCAGGTGTAGTAAAACTATCGCTGAATTCCTGCTCATTATCAAATATGAACATAGTTCAGGGATCGAATATAAGCGGGTTTGGCCTTGCTTATATCCTAAACCACGATTCTTGTACTTTTTCTTCAGTTGCTGAAGGTAGTACAATTGCTAAAATTTACTCGCGTGCAATCGCGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
3dc067e77330771d986f85fbd04ed0b3e11921e2a9bc278eddd527f0b554bb03
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6919
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Bacteriophage therapy against pathological Klebsiella pneumoniae that determine the clinical course of primary sclerosing cholangitis Ichikawa,M., Nakamoto,N., Kredo-Russo,S., Weinstock,E., Weiner,I.N., Khabra,E., Ben-Ishay,N., Inbar,D., Kowalsman,N., Mordoch,R., Nicenboim,J., Golembo,M., Zak,N.B., Suzuki,T., Miyamoto,K., Teratani,T., Fujimori,S., Aoto,Y., Konda,M., Hayashi,N., Chu,P.-S., Taniki,N., Morikawa,R., Kasuga,R., Tabuchi,T., Sugimoto,S., Mikami,Y., Shiota,A., Bassan,M. and Kanai,T. 2023-06 — GenBank