Protein

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Genbank accession
QDJ96518.1 [GenBank]
Protein name
gene transfer agent host specificity protein
RBP type
TSP
Evidence RBPdetect2
Probability 0,61
Protein sequence
MATISFKCDTCKRTVELVENPQGFTVVGKCVITNGCVGRLYKTGRNPNNVRESAPTYVEGLDNYVPRRTFYEFNQTLASNKWDVTHNMGILPSTFVYIRQDNGTYVPADNSSYTVTPLSKNRITITFPQKVVGILQCIAKSTVPLVPSTLPAAESLFQVSANGVVTFAVPKYITQLRGSVPAVSSPVVTPTITPSVTPTSTPVSLPVNMSTTGNIQIEIEITKPNEDPFICFEDFPNVISNESPWAGWSEVLVAKRRNYSVRSANLLRLKVFGSADLEAGDIPNGTRLRFLRIDFGDGRKEAIPSRTLLMLLAKSPYAFVDKVKDRIVDVGELIGDSPDYFIYNNGELFLDSSKVEKSYPDINRVIPQAAPPLPSPTPTPTVTPTMTATPTPSVTREASPTPTSTATQTPEPTTSVTPTETPVETPAPTPTPSATPINAFDITGATLIPSTGSFVYATQPYTLLVNGEVQYVENMHRAGSPDSDVVIALKQLWERYPNCNTISVVISWFGNDLRAGDCEIKPRIGLPVSTKDGASWIPNNWNVAGLSPQQVDSTSIVGGKNVYGSTPSDQSIRELITYIKSQGRKVVFYPFVLMDIQSTNTLPNPWSPSEFQPINPWRGRVTCNPAPGVSGSVDGTSVADTQINAFFNKEWGFSRFITHYAQLCAELGGVDVFLIGSEMVGVTRVRGVSGYPAVTNLKSIAATVKTLLPSSLVSYAADWTEYHSQQYPNGTLRFNLDPLWADPNIDFVGIDNYLPIADVRDTDDANLIYNIDYLKSNIEGGELFDWYYVDRTQNIKQPITDGSYGKPWVYRQKDIRSWWGNPHFERVNGVESNVPTSYVPSSKPIWFTEYGCAAINRAPNQPNVFFDPGSSESFAPYFSTGQVDIEAQSSYYKAMNSYWAQHGGTMLSLDHMIAWTWDARPYPEFPTMTSVWGDYVNYGTGHWLQGRNYSLAPVVTPNVTPSVTPTRAASITPSTTRTPAATSTATPTVTATVSVTPGVTPTVTTTRTPGVTPTVTSTGTPVVTPTMTVTATTTITPTVTVTVSPTIAASVTPTPSITPSVTPTITPTKSAGATPTPTVTSSVSPTITPTQTTTATVTPTVTPTPTVSLTRTPTITPTKTAAPTPTPTPTPDNVGVTWVGSPGITTNPWSSVARSDSIGAFAAVANDGTNRVMTSPDGISWTQQVESDGNPWLSITSSETSGKFVAVASDGFNRAMTSVDAINWVTHFIPEANSWRSVIWSAFMGKFVAVASDGVNRLTTSTDGITWTVSPIQSTGAWNAIASGDSIQTLVAVDYSVTGKIVYSTDSGATWQDATVPTPLPWITVAWSPVLNKFVAVANDGGNRIIHSSDGITWSDVVTWTGAAVQYSYWANIIWAGNKFILVGQSGTQQVATSHDGIQWNPQTISDDNFWTGLAYSSLLNVVVAVSKNGVNRVSRSPS
Physico‐chemical
properties
protein length:1439 AA
molecular weight: 155293,40930 Da
isoelectric point:5,39171
aromaticity:0,09312
hydropathy:-0,15914

Domains

Domains [InterPro]
PTHR46155
Unmapped
177–444
PTHR46155 cd19607 DC_2179 IPR036278
DC_1317
STR
341–486
DC_1317 G3DSA:3.20.20.80 DC_1686 DC_2179
IPR017853
ATT
561–920
IPR017853
IPR025195
STR
651–926
IPR025195
QDJ96518.1
1 1439
Architecture
STR
STR
ATT
STR
STR
STR 341-486 | STR 496-560 | ATT 561-920 | STR 921-955 | STR 1033-1439
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QDJ96518.1
1 1439
Domain Start End Length (AA) Confidence
N-terminal 1 214 214 0,9651
Central domain 215 454 241 0,3608
C-terminal 455 1439 984 0,2155
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-214
Central
215-454
C-terminal
455-1439

Taxonomy

  Name Taxonomy ID Lineage
Phage Xanthomonas phage Xoo-sp13
[NCBI] 		2591401 No lineage information
Host Xanthomonas oryzae pv. oryzae
[NCBI] 		64187 Pseudomonadota > Gammaproteobacteria > Lysobacterales > Lysobacteraceae > Xanthomonas > Xanthomonas oryzae

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QDJ96518.1 [NCBI]
Genbank nucleotide accession
MN047793 [NCBI]
CDS location
range 250829 -> 255148
strand -
CDS
ATGGCAACTATTTCCTTCAAATGTGATACCTGTAAACGTACTGTAGAACTTGTGGAGAACCCGCAAGGGTTTACTGTTGTTGGGAAATGCGTTATCACTAACGGGTGCGTTGGTAGATTATATAAGACTGGACGCAATCCCAACAACGTACGTGAAAGTGCTCCCACCTATGTTGAGGGACTTGATAATTACGTACCACGCAGAACATTCTACGAATTTAACCAAACGTTAGCAAGTAATAAATGGGATGTTACCCACAACATGGGTATCTTACCCTCAACATTTGTTTACATTAGACAAGATAATGGTACATACGTTCCTGCTGATAACAGCAGTTATACTGTAACACCACTATCTAAAAATAGAATTACTATTACATTTCCTCAAAAAGTAGTAGGAATTCTACAATGCATTGCTAAGTCTACTGTACCATTAGTTCCTTCCACTCTTCCCGCAGCAGAAAGCTTATTCCAAGTTTCTGCAAATGGTGTTGTTACATTTGCTGTACCTAAGTACATTACGCAATTACGTGGGTCAGTCCCCGCTGTGTCGTCGCCTGTAGTTACTCCAACAATCACACCATCAGTAACTCCAACAAGTACTCCGGTGAGTCTGCCGGTTAATATGAGTACTACTGGTAACATACAAATTGAAATTGAAATTACAAAACCAAATGAAGACCCATTCATCTGTTTCGAAGATTTTCCTAACGTCATAAGTAATGAATCCCCCTGGGCTGGCTGGAGTGAAGTTCTAGTCGCTAAGCGCCGTAACTACAGTGTCCGTTCTGCAAATCTTTTACGTCTTAAAGTTTTTGGTAGTGCTGATCTTGAAGCCGGTGATATTCCGAATGGGACTCGCCTACGTTTCCTACGTATAGATTTCGGAGATGGCCGAAAAGAGGCTATTCCATCTCGTACATTATTAATGCTATTAGCAAAATCTCCGTATGCATTCGTGGATAAGGTCAAGGACCGCATTGTTGACGTTGGCGAACTTATTGGAGATTCCCCGGATTACTTTATCTACAATAATGGCGAACTATTTTTAGATTCGTCTAAGGTAGAAAAGAGCTATCCTGATATCAATCGCGTCATCCCACAGGCTGCTCCACCGTTGCCGTCTCCAACGCCTACTCCTACTGTTACTCCTACAATGACGGCAACGCCGACACCATCAGTAACACGAGAAGCTTCCCCAACGCCAACGAGTACCGCAACACAAACTCCGGAACCAACGACATCCGTTACGCCTACTGAGACCCCTGTAGAAACACCAGCACCTACGCCAACGCCAAGTGCCACACCAATTAATGCCTTTGATATTACTGGTGCGACATTAATCCCGTCAACTGGTAGCTTTGTGTATGCAACCCAGCCTTACACTCTGCTAGTAAATGGTGAAGTACAATACGTGGAAAATATGCATCGTGCAGGGTCTCCAGATTCTGACGTAGTTATTGCCCTTAAACAACTATGGGAGCGTTATCCAAATTGTAATACTATCAGTGTGGTGATTTCTTGGTTCGGTAATGACTTGCGTGCAGGCGATTGCGAAATTAAACCACGTATCGGTCTGCCAGTTTCTACTAAAGATGGTGCCTCATGGATTCCTAATAACTGGAATGTTGCAGGCCTATCACCACAACAAGTAGATTCTACCAGCATTGTTGGTGGCAAAAACGTATATGGTTCTACGCCAAGTGACCAATCTATCCGCGAGCTAATCACGTACATTAAATCACAAGGCCGTAAGGTAGTATTCTATCCATTCGTGTTGATGGATATCCAATCTACGAATACATTGCCTAACCCATGGAGTCCTTCAGAGTTTCAGCCGATCAATCCATGGCGTGGTCGTGTTACTTGTAATCCAGCGCCTGGAGTGTCCGGTAGTGTTGATGGAACCTCTGTTGCTGATACGCAAATTAATGCATTCTTCAACAAAGAATGGGGATTTTCACGATTTATTACCCACTACGCACAACTATGCGCTGAATTAGGCGGTGTAGACGTATTTCTAATCGGTTCCGAGATGGTTGGTGTTACGCGAGTACGTGGTGTATCTGGGTATCCGGCAGTAACTAACTTGAAATCTATTGCGGCAACCGTTAAGACACTGCTTCCGTCAAGCCTAGTATCATATGCTGCTGACTGGACGGAATACCATTCACAACAATATCCGAACGGAACTCTTCGCTTTAATCTTGACCCACTATGGGCTGACCCAAATATTGACTTCGTTGGTATTGACAATTACCTACCTATTGCTGACGTTCGTGACACAGACGATGCGAACCTAATCTACAATATTGATTACTTGAAGTCTAATATTGAAGGTGGAGAGCTATTTGATTGGTATTATGTTGATCGCACTCAAAATATCAAACAGCCTATTACTGATGGTAGTTATGGTAAACCATGGGTGTACCGCCAGAAAGATATTCGCTCATGGTGGGGTAACCCTCACTTTGAACGTGTGAATGGTGTTGAAAGTAATGTACCAACCTCATATGTACCTTCAAGTAAGCCGATTTGGTTTACGGAGTACGGTTGTGCAGCTATCAATCGTGCACCAAATCAACCGAATGTATTCTTTGATCCTGGCTCTTCTGAATCTTTTGCCCCATATTTTTCAACAGGACAAGTCGATATTGAGGCGCAATCCTCTTACTACAAAGCCATGAATTCATACTGGGCACAACACGGTGGAACCATGTTGTCACTAGATCACATGATCGCATGGACATGGGATGCTCGCCCATACCCAGAATTCCCAACTATGACTTCAGTATGGGGTGATTATGTTAACTATGGTACTGGACACTGGTTACAGGGCCGTAACTACAGCTTAGCTCCAGTAGTTACTCCAAATGTAACTCCTTCCGTTACACCTACACGTGCTGCTTCTATTACACCATCAACAACACGTACACCCGCTGCCACATCAACTGCTACACCGACTGTAACAGCAACCGTTAGTGTTACCCCTGGCGTTACTCCAACTGTAACAACAACACGTACACCGGGTGTTACTCCAACGGTAACGAGTACTGGTACTCCAGTGGTTACTCCAACCATGACAGTTACTGCTACAACAACTATAACACCGACTGTTACTGTTACAGTGTCGCCAACGATTGCTGCATCAGTTACACCAACACCAAGTATAACTCCGTCAGTAACACCGACAATTACACCGACAAAATCTGCTGGAGCAACACCGACACCTACAGTTACTTCTTCTGTAAGTCCTACGATTACTCCAACGCAAACTACGACGGCAACGGTTACTCCAACAGTAACACCAACACCTACTGTGTCACTAACTAGAACTCCTACGATTACTCCTACGAAGACCGCAGCCCCGACGCCAACACCAACCCCAACCCCAGATAATGTCGGGGTTACATGGGTAGGTTCTCCCGGTATAACGACCAACCCATGGTCATCTGTGGCCCGCTCAGATAGTATCGGAGCCTTTGCTGCCGTAGCAAATGATGGTACTAACCGCGTCATGACATCACCAGATGGTATTAGTTGGACTCAACAAGTCGAATCTGATGGAAATCCATGGCTATCAATAACTAGTAGTGAAACTTCTGGTAAATTCGTGGCAGTCGCAAGCGACGGATTTAACCGAGCTATGACATCAGTTGATGCTATTAATTGGGTGACACATTTTATTCCTGAAGCCAACTCATGGCGTTCCGTAATCTGGTCAGCATTCATGGGTAAATTCGTAGCTGTAGCATCAGACGGTGTAAACCGTTTAACCACTTCAACTGATGGTATTACATGGACCGTTAGCCCAATTCAGTCAACCGGTGCATGGAATGCTATCGCAAGTGGTGATTCGATTCAGACATTAGTCGCGGTAGACTACAGTGTTACGGGTAAGATTGTATACAGTACAGATAGTGGCGCTACTTGGCAAGATGCTACAGTTCCAACACCACTACCATGGATTACCGTTGCATGGTCTCCAGTGTTGAATAAGTTCGTAGCTGTGGCAAATGATGGCGGAAATCGTATTATTCACTCAAGTGACGGTATAACGTGGTCTGATGTAGTTACATGGACTGGTGCTGCTGTACAATATAGTTATTGGGCTAACATCATTTGGGCGGGTAACAAGTTTATTCTTGTTGGACAATCTGGCACACAGCAAGTTGCTACTTCTCATGATGGTATTCAGTGGAATCCACAAACTATAAGTGATGATAATTTCTGGACTGGCTTGGCATACTCAAGTTTACTGAATGTAGTAGTCGCAGTATCCAAGAATGGTGTGAACCGTGTCTCTAGAAGTCCAAGTTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
786d4091190565aab5f11982611cdc5ad9c0d5c03eda04eb6ace80b1b594a1eb
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,7667
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization and genome sequence analysis of a novel phage Xoo-sp13 that infects Xanthomonas oryzae pv. oryzae Nazir,A., Dong,Z., Liu,J., Tong,Y. and Peng,D. 2021-02-14 — GenBank