Protein

Genbank accession
QDJ96518.1 [GenBank]
Protein name
gene transfer agent host specificity protein
RBP type
TSP
Evidence RBPdetect2
Probability 0,61
Protein sequence
MATISFKCDTCKRTVELVENPQGFTVVGKCVITNGCVGRLYKTGRNPNNVRESAPTYVEGLDNYVPRRTFYEFNQTLASNKWDVTHNMGILPSTFVYIRQDNGTYVPADNSSYTVTPLSKNRITITFPQKVVGILQCIAKSTVPLVPSTLPAAESLFQVSANGVVTFAVPKYITQLRGSVPAVSSPVVTPTITPSVTPTSTPVSLPVNMSTTGNIQIEIEITKPNEDPFICFEDFPNVISNESPWAGWSEVLVAKRRNYSVRSANLLRLKVFGSADLEAGDIPNGTRLRFLRIDFGDGRKEAIPSRTLLMLLAKSPYAFVDKVKDRIVDVGELIGDSPDYFIYNNGELFLDSSKVEKSYPDINRVIPQAAPPLPSPTPTPTVTPTMTATPTPSVTREASPTPTSTATQTPEPTTSVTPTETPVETPAPTPTPSATPINAFDITGATLIPSTGSFVYATQPYTLLVNGEVQYVENMHRAGSPDSDVVIALKQLWERYPNCNTISVVISWFGNDLRAGDCEIKPRIGLPVSTKDGASWIPNNWNVAGLSPQQVDSTSIVGGKNVYGSTPSDQSIRELITYIKSQGRKVVFYPFVLMDIQSTNTLPNPWSPSEFQPINPWRGRVTCNPAPGVSGSVDGTSVADTQINAFFNKEWGFSRFITHYAQLCAELGGVDVFLIGSEMVGVTRVRGVSGYPAVTNLKSIAATVKTLLPSSLVSYAADWTEYHSQQYPNGTLRFNLDPLWADPNIDFVGIDNYLPIADVRDTDDANLIYNIDYLKSNIEGGELFDWYYVDRTQNIKQPITDGSYGKPWVYRQKDIRSWWGNPHFERVNGVESNVPTSYVPSSKPIWFTEYGCAAINRAPNQPNVFFDPGSSESFAPYFSTGQVDIEAQSSYYKAMNSYWAQHGGTMLSLDHMIAWTWDARPYPEFPTMTSVWGDYVNYGTGHWLQGRNYSLAPVVTPNVTPSVTPTRAASITPSTTRTPAATSTATPTVTATVSVTPGVTPTVTTTRTPGVTPTVTSTGTPVVTPTMTVTATTTITPTVTVTVSPTIAASVTPTPSITPSVTPTITPTKSAGATPTPTVTSSVSPTITPTQTTTATVTPTVTPTPTVSLTRTPTITPTKTAAPTPTPTPTPDNVGVTWVGSPGITTNPWSSVARSDSIGAFAAVANDGTNRVMTSPDGISWTQQVESDGNPWLSITSSETSGKFVAVASDGFNRAMTSVDAINWVTHFIPEANSWRSVIWSAFMGKFVAVASDGVNRLTTSTDGITWTVSPIQSTGAWNAIASGDSIQTLVAVDYSVTGKIVYSTDSGATWQDATVPTPLPWITVAWSPVLNKFVAVANDGGNRIIHSSDGITWSDVVTWTGAAVQYSYWANIIWAGNKFILVGQSGTQQVATSHDGIQWNPQTISDDNFWTGLAYSSLLNVVVAVSKNGVNRVSRSPS
Physico‐chemical
properties
protein length:1439 AA
molecular weight: 155293,40930 Da
isoelectric point:5,39171
aromaticity:0,09312
hydropathy:-0,15914

Domains

Domains [InterPro]
PTHR46155
177–444
PTHR46155 cd19607 IPR036278
G3DSA:3.20.20.80
530–936
G3DSA:3.20.20.80
IPR017853
561–920
IPR017853
IPR025195
651–926
IPR025195
QDJ96518.1
1 1439
Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Xanthomonas phage Xoo-sp13
[NCBI] 		2591401 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QDJ96518.1 [NCBI]
Genbank nucleotide accession
MN047793 [NCBI]
CDS location
range 250829 -> 255148
strand -
CDS
ATGGCAACTATTTCCTTCAAATGTGATACCTGTAAACGTACTGTAGAACTTGTGGAGAACCCGCAAGGGTTTACTGTTGTTGGGAAATGCGTTATCACTAACGGGTGCGTTGGTAGATTATATAAGACTGGACGCAATCCCAACAACGTACGTGAAAGTGCTCCCACCTATGTTGAGGGACTTGATAATTACGTACCACGCAGAACATTCTACGAATTTAACCAAACGTTAGCAAGTAATAAATGGGATGTTACCCACAACATGGGTATCTTACCCTCAACATTTGTTTACATTAGACAAGATAATGGTACATACGTTCCTGCTGATAACAGCAGTTATACTGTAACACCACTATCTAAAAATAGAATTACTATTACATTTCCTCAAAAAGTAGTAGGAATTCTACAATGCATTGCTAAGTCTACTGTACCATTAGTTCCTTCCACTCTTCCCGCAGCAGAAAGCTTATTCCAAGTTTCTGCAAATGGTGTTGTTACATTTGCTGTACCTAAGTACATTACGCAATTACGTGGGTCAGTCCCCGCTGTGTCGTCGCCTGTAGTTACTCCAACAATCACACCATCAGTAACTCCAACAAGTACTCCGGTGAGTCTGCCGGTTAATATGAGTACTACTGGTAACATACAAATTGAAATTGAAATTACAAAACCAAATGAAGACCCATTCATCTGTTTCGAAGATTTTCCTAACGTCATAAGTAATGAATCCCCCTGGGCTGGCTGGAGTGAAGTTCTAGTCGCTAAGCGCCGTAACTACAGTGTCCGTTCTGCAAATCTTTTACGTCTTAAAGTTTTTGGTAGTGCTGATCTTGAAGCCGGTGATATTCCGAATGGGACTCGCCTACGTTTCCTACGTATAGATTTCGGAGATGGCCGAAAAGAGGCTATTCCATCTCGTACATTATTAATGCTATTAGCAAAATCTCCGTATGCATTCGTGGATAAGGTCAAGGACCGCATTGTTGACGTTGGCGAACTTATTGGAGATTCCCCGGATTACTTTATCTACAATAATGGCGAACTATTTTTAGATTCGTCTAAGGTAGAAAAGAGCTATCCTGATATCAATCGCGTCATCCCACAGGCTGCTCCACCGTTGCCGTCTCCAACGCCTACTCCTACTGTTACTCCTACAATGACGGCAACGCCGACACCATCAGTAACACGAGAAGCTTCCCCAACGCCAACGAGTACCGCAACACAAACTCCGGAACCAACGACATCCGTTACGCCTACTGAGACCCCTGTAGAAACACCAGCACCTACGCCAACGCCAAGTGCCACACCAATTAATGCCTTTGATATTACTGGTGCGACATTAATCCCGTCAACTGGTAGCTTTGTGTATGCAACCCAGCCTTACACTCTGCTAGTAAATGGTGAAGTACAATACGTGGAAAATATGCATCGTGCAGGGTCTCCAGATTCTGACGTAGTTATTGCCCTTAAACAACTATGGGAGCGTTATCCAAATTGTAATACTATCAGTGTGGTGATTTCTTGGTTCGGTAATGACTTGCGTGCAGGCGATTGCGAAATTAAACCACGTATCGGTCTGCCAGTTTCTACTAAAGATGGTGCCTCATGGATTCCTAATAACTGGAATGTTGCAGGCCTATCACCACAACAAGTAGATTCTACCAGCATTGTTGGTGGCAAAAACGTATATGGTTCTACGCCAAGTGACCAATCTATCCGCGAGCTAATCACGTACATTAAATCACAAGGCCGTAAGGTAGTATTCTATCCATTCGTGTTGATGGATATCCAATCTACGAATACATTGCCTAACCCATGGAGTCCTTCAGAGTTTCAGCCGATCAATCCATGGCGTGGTCGTGTTACTTGTAATCCAGCGCCTGGAGTGTCCGGTAGTGTTGATGGAACCTCTGTTGCTGATACGCAAATTAATGCATTCTTCAACAAAGAATGGGGATTTTCACGATTTATTACCCACTACGCACAACTATGCGCTGAATTAGGCGGTGTAGACGTATTTCTAATCGGTTCCGAGATGGTTGGTGTTACGCGAGTACGTGGTGTATCTGGGTATCCGGCAGTAACTAACTTGAAATCTATTGCGGCAACCGTTAAGACACTGCTTCCGTCAAGCCTAGTATCATATGCTGCTGACTGGACGGAATACCATTCACAACAATATCCGAACGGAACTCTTCGCTTTAATCTTGACCCACTATGGGCTGACCCAAATATTGACTTCGTTGGTATTGACAATTACCTACCTATTGCTGACGTTCGTGACACAGACGATGCGAACCTAATCTACAATATTGATTACTTGAAGTCTAATATTGAAGGTGGAGAGCTATTTGATTGGTATTATGTTGATCGCACTCAAAATATCAAACAGCCTATTACTGATGGTAGTTATGGTAAACCATGGGTGTACCGCCAGAAAGATATTCGCTCATGGTGGGGTAACCCTCACTTTGAACGTGTGAATGGTGTTGAAAGTAATGTACCAACCTCATATGTACCTTCAAGTAAGCCGATTTGGTTTACGGAGTACGGTTGTGCAGCTATCAATCGTGCACCAAATCAACCGAATGTATTCTTTGATCCTGGCTCTTCTGAATCTTTTGCCCCATATTTTTCAACAGGACAAGTCGATATTGAGGCGCAATCCTCTTACTACAAAGCCATGAATTCATACTGGGCACAACACGGTGGAACCATGTTGTCACTAGATCACATGATCGCATGGACATGGGATGCTCGCCCATACCCAGAATTCCCAACTATGACTTCAGTATGGGGTGATTATGTTAACTATGGTACTGGACACTGGTTACAGGGCCGTAACTACAGCTTAGCTCCAGTAGTTACTCCAAATGTAACTCCTTCCGTTACACCTACACGTGCTGCTTCTATTACACCATCAACAACACGTACACCCGCTGCCACATCAACTGCTACACCGACTGTAACAGCAACCGTTAGTGTTACCCCTGGCGTTACTCCAACTGTAACAACAACACGTACACCGGGTGTTACTCCAACGGTAACGAGTACTGGTACTCCAGTGGTTACTCCAACCATGACAGTTACTGCTACAACAACTATAACACCGACTGTTACTGTTACAGTGTCGCCAACGATTGCTGCATCAGTTACACCAACACCAAGTATAACTCCGTCAGTAACACCGACAATTACACCGACAAAATCTGCTGGAGCAACACCGACACCTACAGTTACTTCTTCTGTAAGTCCTACGATTACTCCAACGCAAACTACGACGGCAACGGTTACTCCAACAGTAACACCAACACCTACTGTGTCACTAACTAGAACTCCTACGATTACTCCTACGAAGACCGCAGCCCCGACGCCAACACCAACCCCAACCCCAGATAATGTCGGGGTTACATGGGTAGGTTCTCCCGGTATAACGACCAACCCATGGTCATCTGTGGCCCGCTCAGATAGTATCGGAGCCTTTGCTGCCGTAGCAAATGATGGTACTAACCGCGTCATGACATCACCAGATGGTATTAGTTGGACTCAACAAGTCGAATCTGATGGAAATCCATGGCTATCAATAACTAGTAGTGAAACTTCTGGTAAATTCGTGGCAGTCGCAAGCGACGGATTTAACCGAGCTATGACATCAGTTGATGCTATTAATTGGGTGACACATTTTATTCCTGAAGCCAACTCATGGCGTTCCGTAATCTGGTCAGCATTCATGGGTAAATTCGTAGCTGTAGCATCAGACGGTGTAAACCGTTTAACCACTTCAACTGATGGTATTACATGGACCGTTAGCCCAATTCAGTCAACCGGTGCATGGAATGCTATCGCAAGTGGTGATTCGATTCAGACATTAGTCGCGGTAGACTACAGTGTTACGGGTAAGATTGTATACAGTACAGATAGTGGCGCTACTTGGCAAGATGCTACAGTTCCAACACCACTACCATGGATTACCGTTGCATGGTCTCCAGTGTTGAATAAGTTCGTAGCTGTGGCAAATGATGGCGGAAATCGTATTATTCACTCAAGTGACGGTATAACGTGGTCTGATGTAGTTACATGGACTGGTGCTGCTGTACAATATAGTTATTGGGCTAACATCATTTGGGCGGGTAACAAGTTTATTCTTGTTGGACAATCTGGCACACAGCAAGTTGCTACTTCTCATGATGGTATTCAGTGGAATCCACAAACTATAAGTGATGATAATTTCTGGACTGGCTTGGCATACTCAAGTTTACTGAATGTAGTAGTCGCAGTATCCAAGAATGGTGTGAACCGTGTCTCTAGAAGTCCAAGTTGA

Gene Ontology

No Gene Ontology terms available.

Enzymatic activity

No enzymatic activity data available.

Tertiary structure

PDB ID
786d4091190565aab5f11982611cdc5ad9c0d5c03eda04eb6ace80b1b594a1eb
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,7526
Evidence 0,7526
Download PDB

Literature

Title Authors Date PMID Source
Characterization and genome sequence analysis of a novel phage Xoo-sp13 that infects Xanthomonas oryzae pv. oryzae Nazir,A., Dong,Z., Liu,J., Tong,Y. and Peng,D. 2021-02-14 — GenBank