Protein

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Genbank accession
AGB07279.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MKVINGGIPGKPEVPVEIGNVYNQLALINIKRSEQLRQTDLKVNEIVTRIHEQQERDYGNLERQLKHHFESPGLKHGENLHTLGLQMVNDFPFGTVDDVVVNKDWHTYLNPESLSDALQQWRYADDDRVLARGNVFYTKNDLRLDALFDSRGIIPDDLVEGWYDVSPVTYYGGVLAPLNTKPDTTGLAILPYIQNHTSTVGVSLGTTTKEVVVYGWGSGTVKDETRGEYYLLDDYHRDTALSFTDLGDEGDLIHDAVWLGVDGDFTTGYAATCYAHAEGITVGLGKVSYGSTMSLDSTYLYQLDDETLGNKLITLQWDEWFTGKTVTLDHEQPKVYGGVETLSDDAQLMLFVMVHLIVDGESGLYVFRWLGDRGDNQCLLKLVESPVTGKLDPLPDNHPFHPVYGRGVFKPTGGHISARHYGNRTFFLEHQHDFTTMHSFLEQRGNLISHPITTEQRVVTHRHYSPLGADLGRMLLTNDHTVINAQQHVDGDWSHYLCHYDGPVGVKHTTFNFNHPKTVCPMAERTTLSREFVNTLQSDGKVGLTGTVWSNKNHYQGILDARGKVGGPIYGKPVAIAEEDLTRFKGEHQEWLDFRGGLGYTALVVFNNGGKLEGLEIRTDHYQYIDVAYLEVKLNVAGEYRLTRLGDRVIVVESSEQIDLVSNTRRWLVTDYYAHYRDGECHVMIQNPYQHRPAIVELRLRNEKVETLSTYIPVPDVTGVVDYAPVIMTLDGPCKPDQANPVSGEYTNHYGLRTHRYAGNVQGAGYLVIERGTQLVVNGDPFDIPPGLVARVTPNKKQYVYLALVNGVVETLVSSNPLTRGQLYAVVESDGTVDLKITEM
Physico‐chemical
properties
protein length:840 AA
molecular weight: 94222,61020 Da
isoelectric point:5,39399
aromaticity:0,09524
hydropathy:-0,36512

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AGB07279.1
1 840
Domain Start End Length (AA) Confidence
N-terminal 1 156 156 0,8390
Central domain 157 355 200 0,7958
C-terminal 356 840 484 0,2547
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-156
Central
157-355
C-terminal
356-840

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage VP4B
[NCBI] 		1262540 Uroviricota > Caudoviricetes > Chimalliviridae > Tidunavirus > Tidunavirus VP4B
Host Vibrio harveyi
[NCBI] 		669 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AGB07279.1 [NCBI]
Genbank nucleotide accession
KC131130 [NCBI]
CDS location
range 193424 -> 195946
strand +
CDS
ATGAAAGTCATTAACGGTGGTATTCCGGGTAAACCGGAAGTACCTGTAGAAATCGGTAACGTTTATAACCAGTTAGCGTTGATCAATATCAAGCGATCGGAACAACTACGACAAACCGATTTAAAAGTAAACGAAATCGTCACCCGTATTCATGAACAACAAGAACGTGATTACGGGAACTTAGAACGACAACTCAAACACCACTTCGAATCACCGGGGTTAAAACACGGAGAAAACCTACACACCTTAGGGTTACAAATGGTTAACGACTTTCCATTTGGTACGGTGGACGATGTTGTCGTTAATAAAGACTGGCACACTTATTTGAACCCAGAGTCATTAAGCGATGCCTTGCAACAATGGCGTTATGCAGACGATGATCGTGTGCTAGCTCGTGGTAACGTGTTCTATACAAAAAATGATTTACGTTTGGATGCGTTGTTTGACAGTCGTGGTATCATCCCTGACGATTTAGTGGAAGGCTGGTATGATGTCTCCCCAGTAACGTACTACGGGGGTGTGCTGGCTCCTTTGAACACCAAACCTGACACGACCGGATTAGCGATACTACCCTACATCCAAAACCACACTTCTACCGTAGGAGTGAGTTTAGGAACGACTACAAAAGAAGTCGTTGTCTACGGATGGGGAAGTGGAACTGTCAAAGACGAAACTCGTGGTGAGTATTACTTGTTGGATGATTATCATCGTGACACCGCACTATCTTTCACTGACCTAGGTGATGAGGGTGATTTAATCCACGACGCGGTATGGTTAGGAGTGGACGGTGACTTCACCACAGGTTATGCTGCTACGTGCTACGCCCACGCCGAAGGGATTACTGTAGGGTTAGGAAAAGTGAGCTACGGTTCAACGATGTCGTTAGATTCAACTTACCTTTACCAACTGGATGATGAGACACTGGGTAATAAACTCATCACGCTACAATGGGATGAATGGTTTACTGGTAAGACGGTAACGTTAGATCATGAACAACCTAAGGTTTATGGTGGGGTGGAAACACTAAGTGACGATGCTCAATTAATGTTGTTCGTCATGGTTCATCTGATCGTGGATGGGGAATCAGGACTTTATGTATTCCGCTGGTTAGGTGATCGTGGTGATAACCAGTGCCTATTAAAGTTAGTGGAATCCCCAGTAACCGGGAAACTGGATCCTCTACCTGACAACCATCCTTTCCATCCGGTTTATGGTCGTGGGGTGTTTAAACCGACCGGTGGACACATCAGTGCACGACATTACGGAAATCGTACGTTTTTCTTAGAACACCAACATGACTTTACCACCATGCATAGTTTCTTAGAACAACGCGGTAACTTAATCAGTCATCCGATTACGACGGAACAGCGTGTCGTGACTCACCGTCATTACTCCCCACTAGGTGCTGACTTAGGACGAATGTTGTTAACGAATGATCATACCGTGATTAACGCCCAACAACACGTTGATGGAGACTGGTCACATTATTTGTGTCATTACGACGGCCCAGTAGGGGTTAAGCATACCACCTTTAACTTCAATCACCCTAAGACGGTTTGTCCTATGGCGGAACGCACTACGTTAAGTAGAGAGTTCGTTAATACACTACAGTCTGATGGGAAAGTGGGGTTAACAGGTACCGTATGGTCTAATAAAAACCATTATCAAGGTATCCTAGATGCTCGTGGTAAAGTGGGTGGTCCGATCTACGGTAAACCCGTAGCCATAGCGGAAGAAGACTTAACTCGTTTTAAAGGTGAACACCAAGAGTGGTTAGACTTCCGTGGTGGTTTAGGTTACACCGCCTTGGTGGTGTTCAACAACGGTGGTAAGCTGGAAGGTCTGGAAATTCGCACTGATCATTACCAATACATCGATGTTGCTTATTTAGAAGTCAAACTCAACGTAGCGGGTGAGTATCGTTTAACTCGTTTAGGTGATCGTGTGATCGTGGTTGAGTCTTCGGAACAAATTGATTTGGTGAGCAACACACGTCGTTGGTTAGTGACCGACTACTACGCTCATTATCGTGATGGTGAGTGTCATGTGATGATACAAAACCCTTACCAACATCGACCAGCAATCGTGGAGCTGCGTTTACGTAATGAGAAAGTAGAAACGTTATCGACTTATATCCCTGTTCCCGATGTGACGGGTGTGGTGGATTACGCGCCAGTAATCATGACGTTGGATGGACCGTGTAAACCTGACCAAGCTAATCCAGTTAGCGGGGAATACACTAACCATTACGGTTTACGAACTCATCGTTACGCAGGTAATGTGCAGGGTGCTGGGTATTTGGTGATCGAACGTGGGACCCAACTCGTAGTGAATGGTGACCCGTTTGATATCCCACCGGGTTTAGTAGCTCGTGTTACACCAAACAAGAAACAATACGTTTACTTGGCTTTGGTTAACGGTGTGGTGGAAACCTTAGTGAGTAGTAATCCCCTCACTCGTGGTCAACTCTACGCCGTAGTAGAATCCGATGGTACGGTCGACCTTAAAATAACCGAAATGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
c6191ec0a884874df0765ced4da654ab012231d4fe1e2964b85aea02904309f8
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,3375
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of a novel phiKZ-like Vibrio phage Luo,Z. and Yu,Y. 2015-12 — GenBank