Protein

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Genbank accession
WPK40662.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect
Probability 0,87
Protein sequence
MSYTITKSNGNIIAIPDGTISNVYSTSLVGRITPAYGQSLAQSTIRTLENFANNTSPRGAIKGQLWFDTRTNVMKVWIGNDPVNSTDNTSANPNHASWKSLISTVDSTIIPATNTVDLGAAANRFRVGYFSTVNTTNLVAGTTQLGSTTIGGNVLPSTNSQYSIGSASLTFADIYARRFLATQEIVFSRSNGNITLGFIPLSDTAVGMKNTTDTLGSASSRIAGVYASGMYANSLSVGSGQPGYGVITNLIPSTTNAFTLGSDTNRYSKIYGMELYARDKIIPGVPDTTTMGDVNNAFGLSYINEITTSKINARTTTSSIGSQTSPFQNIYGTNLIGTSTSSKYADLAERYEADGELDTGTVVKLGGSKEITMTTLDADTEVFGVISTSAGIMMNADAGTDDTHPFVALAGRVPVKVIGPISKGDRLVASDVPGVARRITMSELQQLGPMGVYSIIGRAISSKSTSDVELVLCAIGSK
Physico‐chemical
properties
protein length:478 AA
molecular weight: 50195,64560 Da
isoelectric point:6,18717
aromaticity:0,06904
hydropathy:-0,05126

Domains

Domains [InterPro]
DC_0320
STR
1–476
DC_0320
G3DSA:2.40.300.10
RBD
344–457
G3DSA:2.40.300.10
WPK40662.1
1 478
Architecture
STR
STR 1-476 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WPK40662.1
1 478
Domain Start End Length (AA) Confidence
N-terminal 1 243 243 0,2547
Central domain 244 442 200 0,2666
C-terminal 443 478 35 0,9774
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-243
Central
244-442
C-terminal
443-478

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage Paride
[NCBI] 		3092178 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Pseudomonas aeruginosa PAO1
[NCBI] 		208964 Bacteria > Proteobacteria > Gammaproteobacteria > Pseudomonadales > Pseudomonadaceae > Pseudomonas

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WPK40662.1 [NCBI]
Genbank nucleotide accession
OR805295 [NCBI]
CDS location
range 204094 -> 205530
strand -
CDS
ATGTCATATACAATTACAAAGTCAAACGGAAATATAATAGCAATACCTGATGGTACTATATCTAACGTATATTCTACTAGCTTAGTCGGTAGAATAACACCTGCATATGGACAATCTTTAGCACAGTCTACAATAAGAACATTAGAAAACTTTGCAAATAATACATCTCCTCGGGGTGCAATAAAAGGGCAACTTTGGTTTGATACTAGAACTAATGTAATGAAAGTGTGGATAGGAAACGATCCTGTCAATTCTACAGACAACACTAGTGCAAACCCAAATCATGCATCGTGGAAATCATTAATAAGTACAGTAGATTCTACAATAATTCCTGCAACAAATACAGTAGATTTAGGCGCAGCCGCAAATAGATTCAGAGTCGGTTATTTCAGTACAGTTAATACAACTAATTTAGTTGCAGGAACAACTCAATTAGGTTCTACTACTATAGGCGGTAATGTACTACCCAGTACAAATTCTCAGTATTCTATAGGTTCGGCAAGTTTAACATTTGCAGATATATATGCAAGAAGATTTCTTGCAACACAAGAAATTGTATTTTCTAGATCAAACGGTAATATTACTTTAGGTTTTATACCTCTTAGTGATACAGCAGTTGGGATGAAAAACACAACTGATACTCTAGGTAGTGCTTCGAGTAGAATTGCAGGTGTATATGCAAGCGGGATGTATGCTAATAGTTTATCAGTCGGATCCGGGCAGCCAGGTTATGGTGTTATTACTAACTTAATACCTAGCACAACTAATGCGTTTACTTTAGGTTCAGATACAAATAGATATTCTAAAATATACGGTATGGAATTATATGCAAGAGATAAGATAATTCCTGGTGTACCTGATACTACCACAATGGGCGATGTTAATAATGCATTTGGCCTATCATACATAAACGAAATAACAACATCTAAAATAAATGCTAGAACAACTACTTCTTCTATAGGAAGTCAAACTAGTCCTTTCCAAAATATTTATGGAACTAATTTAATAGGTACGTCTACATCAAGTAAATATGCAGATCTTGCAGAAAGATATGAAGCTGATGGAGAATTAGATACAGGAACTGTAGTTAAATTGGGTGGTTCTAAAGAAATAACAATGACAACACTCGATGCAGATACAGAAGTATTCGGTGTAATAAGTACAAGTGCAGGCATAATGATGAATGCCGACGCAGGAACAGATGACACTCATCCGTTTGTCGCATTAGCAGGAAGAGTACCCGTGAAAGTAATAGGACCCATATCTAAGGGCGATAGATTAGTTGCAAGTGATGTTCCTGGTGTTGCCCGCAGAATAACAATGTCAGAATTACAACAGTTAGGTCCTATGGGTGTATATAGTATTATAGGACGTGCTATTAGTTCTAAATCAACATCGGATGTAGAATTAGTTTTATGTGCAATAGGCTCTAAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
438ca08745e599e2f4e2c00f2885f011ba4be2fd971ffce7f482aa40efac8671
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7355
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Phage Paride can kill dormant, antibiotic-tolerant cells Maffei,E., Harms,A. and Humolli,D. — — GenBank