Protein

Genbank accession
YP_009791915.1 [GenBank]
Protein name
tail fiber protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MAIYDLGTASLAANGEITGVGTTWKAPLTLIRVGATIVFKTEPVQIYTISEIISDTQINVYNPNSETAPAGTGYAILAHDGITVQGLAQDVAETLRYYQSKETSIESLIEIIENSDIDVIDGKIQEMQQILSSTMAAEASAKSSSDSALEYSNESINSSNESKSARDEAVAAKNSTIEAINNAGDAGTLVTLSNSSGASLIGTADGVTVQEAITNINSELSSVSGLRGDLASVDGSSLVYLPSYDDLRSYSGTATYLYVRGRSAGTTLACGWFGISLEDTTTPDDDGTILVDALNRRWVRIFNGVLLPEWFGADPSGTSDCTSAFNKCFASAKGKEVKLGGKYKFLNPIVVDYGDQYSLKVSGTGSSNHKSGAKTDNYCYLDFDDIPEGSRALTFKGVRGLNLNDFHISHRKASSSVSIALWITQLDNFKIDGLSIDSNSGPSGQGIRFGESSGEDCAFMGSVSNCKVWMHGGGPAFAVQPLCTSITLKNCYQIGGYYYFQGCIYMSMLSCASEGSQVNGYGYVLYSVKGLTAINCAGEGNKNGVFYISNGSSNVEIISPFGSGNNSGNTAIPGALVYVDGSSGFNANIHIDNPVSENQGSNTVNDIGFSSSNKNISVSNVYSQNLSKGIGGSDSWAALDLSVSGDLSQRRFTFTTSGFTVSSPVMSGRYVRNGKRVDFHLSFSGSSVINTTLGSSLLQLPFGSLVAESVCSVTSNTGTSFGNAIINSSGNIYLPTTSGATGFVISGSIITE
Physico‐chemical
properties
protein length:752 AA
molecular weight: 78999,50360 Da
isoelectric point:4,70936
aromaticity:0,08511
hydropathy:-0,07766

Domains

Domains [InterPro]
IPR011050
308–662
IPR011050
IPR012334
309–752
IPR012334
YP_009791915.1
1 752
Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Shigella phage Sd1
[NCBI] 		2024313 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009791915.1 [NCBI]
Genbank nucleotide accession
NC_047847 [NCBI]
CDS location
range 8035 -> 10293
strand +
CDS
ATGGCGATTTATGACTTAGGAACAGCGTCGCTGGCCGCAAATGGCGAGATAACTGGCGTCGGGACAACATGGAAAGCACCTCTTACATTGATCAGAGTTGGTGCAACCATTGTATTTAAAACTGAGCCAGTACAAATTTACACCATATCTGAGATCATCAGCGACACACAGATTAATGTTTATAACCCCAATTCTGAAACTGCCCCTGCCGGAACTGGTTACGCGATTCTTGCTCACGATGGGATTACCGTTCAGGGTTTGGCTCAGGATGTTGCTGAAACTCTGCGTTACTATCAGTCAAAAGAAACTTCAATTGAGTCCTTAATTGAAATAATTGAAAACTCAGATATTGATGTTATTGATGGTAAAATTCAGGAAATGCAGCAAATTCTAAGTAGCACAATGGCAGCAGAAGCGTCAGCAAAATCAAGTAGTGATAGCGCTCTTGAATACAGTAATGAATCGATAAACAGTTCTAATGAGTCAAAGTCTGCAAGGGATGAGGCGGTAGCTGCTAAGAATTCGACAATTGAAGCTATTAATAACGCAGGAGATGCTGGAACACTGGTTACACTCTCCAATTCTAGCGGCGCTTCTCTTATCGGCACGGCTGATGGCGTCACTGTTCAGGAGGCAATTACAAATATAAACTCCGAACTAAGCTCTGTGAGTGGTTTGAGGGGAGATTTAGCCAGTGTAGATGGTTCAAGTTTGGTCTATCTCCCGAGCTACGATGACCTGCGTTCGTATTCTGGCACAGCAACATATCTATATGTCAGAGGGCGAAGTGCTGGAACCACATTGGCCTGTGGGTGGTTTGGCATTTCCCTTGAGGATACTACAACGCCAGACGATGACGGGACAATTTTAGTCGACGCCCTCAATCGGAGATGGGTTCGTATATTTAATGGGGTCTTACTTCCAGAATGGTTTGGGGCCGATCCATCAGGAACTTCAGATTGCACGAGCGCTTTTAATAAATGCTTCGCATCTGCAAAAGGAAAAGAGGTAAAACTAGGCGGTAAGTATAAATTCCTTAACCCTATTGTAGTTGACTACGGGGATCAGTATAGCCTCAAGGTTAGTGGCACCGGGAGCTCAAACCATAAGAGTGGCGCGAAGACAGATAACTACTGTTATCTTGATTTTGATGATATCCCAGAAGGCTCGAGAGCTTTAACATTCAAAGGTGTAAGAGGTCTTAACCTAAATGATTTCCATATATCACACCGTAAAGCTAGCTCGTCGGTATCGATTGCTTTATGGATTACTCAGCTTGATAACTTTAAAATTGATGGTTTAAGTATAGATTCAAATTCTGGCCCATCTGGTCAGGGTATTCGTTTCGGAGAGTCTAGTGGTGAAGACTGTGCTTTCATGGGGTCGGTGTCAAATTGCAAAGTATGGATGCACGGGGGCGGGCCAGCATTTGCAGTGCAACCTTTATGCACATCAATAACACTAAAGAACTGCTATCAAATAGGGGGGTATTATTATTTTCAAGGCTGCATTTACATGTCCATGCTATCTTGTGCCTCAGAAGGAAGTCAGGTAAACGGTTATGGTTATGTTCTGTATTCCGTGAAAGGGCTCACGGCCATAAACTGTGCAGGTGAGGGAAATAAAAATGGAGTTTTTTACATTTCTAATGGATCAAGTAACGTAGAAATAATTTCTCCTTTTGGCTCTGGCAACAACTCGGGTAATACAGCTATACCTGGCGCCCTTGTTTATGTGGATGGAAGTAGTGGGTTTAATGCTAATATTCATATAGATAACCCCGTGAGCGAGAATCAAGGCTCAAACACAGTTAATGATATTGGTTTTAGTTCTTCCAATAAAAACATTAGTGTATCAAACGTGTATTCGCAGAATCTATCAAAAGGAATCGGTGGCTCTGATTCGTGGGCGGCTTTAGATCTTAGTGTTAGTGGGGATTTATCACAAAGGCGATTTACCTTCACCACTAGTGGTTTCACGGTGTCATCACCGGTGATGAGTGGGAGGTACGTTAGAAATGGTAAGAGGGTTGATTTCCACCTATCATTTAGCGGAAGCTCTGTAATAAACACAACACTTGGCTCGAGCCTTTTACAGCTTCCATTTGGTTCGTTGGTTGCTGAATCAGTATGCTCTGTTACTAGTAATACTGGCACCAGTTTTGGAAATGCAATCATAAATTCCAGTGGAAATATCTATTTACCAACAACTAGCGGAGCCACTGGTTTTGTAATTTCTGGCTCAATCATCACGGAATAA

Gene Ontology

No Gene Ontology terms available.

Enzymatic activity

No enzymatic activity data available.

Tertiary structure

PDB ID
94bb191c536b441239369d3deb29b3afcb11dff345cf2a276f635ace97c2be12
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8078
Evidence 0,8078
Download PDB

Literature

Title Authors Date PMID Source
The isolation and characterization of 16 novel Shigella-infecting phages from the environment Doore,S.M., Schrad,J.R., Dover,J.A. and Parent,K.N. 2020-09-29 — GenBank