Protein

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Genbank accession
DBA54900.1 [GenBank]
Protein name
tail
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MGQIIVTRRDGSEYPLAVKKDATTITSARQNWSLLSEDVVNITIESPYPQDYRIGDTIRAFARDYRLNRLPRVRKTGVYKYTYDLAFEGVQYDLLRVFYDLTIETTSNVLQDVQGDALTGDLRRFATVLVSNANRVYPNRWRLGSCPGTVSDKTLSFSEGDNCLAVLQNLCKEFEVEMEIVQVSGVYVINFHEKVGATLPIEFSFGKGNGLYALDRQNVDSSNIITRLKAYGSTDNITHKYRAHRLCLPGKSKAQSFIEKIEAVRKYGIHEACKIFEDIKPTFNGRITGTFVGEVLKFSDASMFDLNEKEPDGETKYLIAGVSAKIHFNTGNLAGYEFDVHEYDHPSRTFTLKQFQDESGHKFPSDNAVAFQFDVGDEYKILDVTLPGRYQQEAEEKLKEEAEKHYNENSQPKIKYGLSVSKSYLEKLFGTDASANVFSPGDSLHIIDAGIGVDKSVRIQAVDRNLLDVYDYTLTISDTVETSILSSMVSELSSVNNAITMNGLSDPAKAKSNWRSSREIMGMVFDPDGDYYTDKIKPNSVDTLALSVGAKSMQFILSGTTFEANFNGNKNAVRIIGGSLVHYAIEEVIRTWKMSNTTQTMNDDKQAYYIYAKCLRRGNSGVFLFSTETIKADQDPNYYHFWVGVLNSVDPELRVRSIALMYGFSMINGRFITTGRIQSGDKSTYFDLDDAEIAGRINFKDGLVSGDIGVGNSLGINAGICGDGISLSSIRFYAGATKQNKHLAPFRVQQDGTAIAQRIKISGESTFSGMVTGITGSFKRLICVNENSQEVGSIQFGSDGKMWFSGDLFSQGYDYTLGRGYRLYASSIWCRGNFGARSLNTLVVNGSSGYYYVNGLGANNGRIPVTFNQATSGGGVVYYDIPLYGAMGDAAGFAVDLIVINARQRHNYNLVGDQGKSVLVANANDQLSHYIFAHGALQELRGGLVSTLVNVGYANMVPAQGSTVLGAGWLFASQYDNSWG
Physico‐chemical
properties
protein length:980 AA
molecular weight: 108316,31530 Da
isoelectric point:5,90571
aromaticity:0,10816
hydropathy:-0,26592

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
DBA54900.1
1 980
Domain Start End Length (AA) Confidence
N-terminal 1 772 772 0,8799
Central domain 773 969 198 0,6022
C-terminal 970 980 10 0,8218
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-772
Central
773-969
C-terminal
970-980

Taxonomy

  Name Taxonomy ID Lineage
Phage Porphyromonas phage phage005a_ATCC49417
[NCBI] 		3154097 Viruses >
Host Porphyromonas gingivalis
[NCBI] 		837 cellular organisms > Bacteria > Pseudomonadati > FCB group > Bacteroidota/Chlorobiota group > Bacteroidota

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
DBA54900.1 [NCBI]
Genbank nucleotide accession
BK068088 [NCBI]
CDS location
range 41939 -> 44881
strand +
CDS
ATGGGACAGATTATAGTAACGAGGCGAGACGGGAGCGAGTACCCTCTTGCTGTAAAAAAAGACGCGACAACGATAACGAGCGCACGCCAAAATTGGTCGCTCCTCTCGGAGGACGTTGTCAATATAACGATCGAAAGCCCGTATCCGCAGGATTACCGCATCGGGGATACCATTCGCGCTTTTGCACGCGATTACCGGCTCAACAGGCTGCCACGCGTGAGAAAGACTGGGGTGTATAAGTACACATATGACCTAGCGTTTGAGGGCGTTCAGTACGACCTTTTAAGGGTATTCTACGACCTGACGATAGAGACGACGAGCAATGTACTACAAGACGTACAAGGCGATGCCTTAACAGGAGATCTGAGAAGATTTGCAACAGTACTTGTATCAAACGCCAACCGCGTGTATCCAAACCGGTGGAGGCTTGGGAGCTGTCCCGGGACAGTGTCTGATAAAACGCTCTCGTTCAGCGAGGGCGACAACTGCTTGGCTGTGCTACAGAATCTCTGTAAGGAGTTCGAGGTGGAGATGGAGATCGTGCAGGTGTCAGGCGTATATGTGATCAATTTTCACGAAAAGGTTGGCGCTACCTTGCCCATCGAGTTCTCATTCGGCAAGGGAAATGGCTTGTACGCCCTGGACAGGCAGAACGTGGACAGCAGTAACATCATTACGCGCCTAAAGGCGTACGGCTCGACTGATAATATAACACACAAGTACCGTGCACATAGGCTGTGTCTCCCAGGCAAGAGCAAGGCGCAATCATTCATCGAGAAAATAGAAGCCGTGAGAAAATACGGCATCCACGAGGCGTGTAAGATATTCGAGGATATCAAGCCGACATTCAATGGACGGATAACCGGAACGTTTGTTGGTGAAGTATTGAAGTTCTCGGATGCCTCTATGTTCGATCTCAACGAAAAAGAACCGGATGGAGAGACAAAGTATCTGATTGCAGGCGTGAGTGCAAAAATTCACTTCAATACCGGAAACCTTGCCGGCTATGAGTTTGATGTGCATGAGTACGACCATCCGAGTCGTACTTTTACACTGAAGCAATTTCAAGACGAGAGCGGGCATAAGTTCCCGTCCGATAATGCAGTAGCATTTCAGTTCGACGTCGGTGATGAGTACAAGATCCTCGATGTAACCCTGCCCGGTAGATACCAGCAGGAGGCGGAGGAGAAGCTGAAAGAGGAGGCGGAAAAACACTACAACGAAAACAGCCAACCGAAAATAAAGTACGGGTTGAGTGTGTCGAAGTCTTACCTCGAAAAGTTATTCGGCACTGATGCTTCTGCAAATGTTTTCTCTCCCGGAGACTCATTGCATATTATTGATGCCGGCATCGGCGTAGACAAGTCGGTTAGAATACAGGCAGTAGACAGGAATCTGCTTGATGTGTACGATTACACGCTCACTATATCCGACACTGTTGAGACGAGTATATTGTCGTCTATGGTTTCCGAACTCTCGTCTGTAAATAACGCGATAACGATGAATGGCCTTAGCGATCCGGCAAAGGCGAAATCGAATTGGCGGTCTTCTCGTGAAATAATGGGCATGGTATTTGACCCTGACGGAGACTATTACACAGATAAGATAAAGCCCAACTCGGTCGACACTCTGGCTCTATCCGTTGGAGCGAAGTCTATGCAATTTATCCTAAGCGGCACAACATTTGAGGCGAACTTCAACGGCAACAAGAACGCTGTGAGGATAATCGGCGGGTCTCTTGTTCATTATGCTATAGAAGAGGTCATTAGGACATGGAAAATGTCGAATACGACCCAAACGATGAACGATGACAAACAGGCATATTATATATACGCTAAGTGTCTTAGACGAGGCAATAGCGGCGTGTTTTTGTTTAGCACAGAAACTATAAAGGCAGACCAAGATCCGAATTATTACCATTTCTGGGTGGGCGTCCTTAACTCTGTGGATCCGGAGCTCCGAGTGCGCTCCATCGCGCTTATGTACGGATTCTCGATGATAAATGGGCGGTTCATTACGACCGGGCGCATACAGAGCGGCGACAAGTCTACGTATTTCGACCTCGACGACGCTGAGATTGCGGGGCGGATAAATTTCAAGGACGGACTTGTTTCCGGAGACATCGGCGTTGGGAATTCACTTGGCATAAACGCCGGTATTTGCGGCGACGGTATATCTCTGTCATCAATTCGGTTCTACGCAGGAGCTACGAAGCAGAACAAGCACCTCGCCCCGTTTCGGGTACAGCAAGACGGAACGGCGATTGCACAAAGGATAAAAATATCAGGGGAATCAACGTTCAGCGGTATGGTAACGGGCATAACAGGAAGCTTCAAGCGGCTTATCTGTGTGAACGAAAATTCTCAAGAAGTAGGCTCTATTCAGTTCGGCTCGGATGGCAAGATGTGGTTTTCCGGCGACCTGTTTTCGCAAGGCTACGACTACACACTTGGGCGTGGGTATAGGCTCTACGCTTCGAGCATTTGGTGCCGTGGCAACTTTGGTGCACGGTCTCTAAACACACTCGTGGTAAACGGATCAAGCGGATACTATTATGTAAATGGACTCGGAGCAAACAACGGGCGTATTCCGGTTACATTCAATCAAGCTACATCAGGCGGTGGCGTCGTTTACTATGATATACCGCTCTATGGGGCAATGGGGGATGCCGCAGGTTTTGCTGTTGATCTCATCGTAATCAACGCGAGACAAAGGCACAACTACAACCTTGTAGGAGACCAAGGTAAGTCTGTACTTGTCGCAAATGCCAACGATCAATTAAGCCACTATATATTCGCACACGGCGCACTACAGGAGTTGCGCGGTGGGCTGGTATCCACGCTTGTAAATGTCGGATATGCGAACATGGTACCTGCGCAAGGATCGACCGTGCTCGGCGCAGGTTGGTTGTTTGCCTCGCAATACGACAACAGCTGGGGGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
c3c8bee32a3fb89cd3890b50ab8a487c65fcb893fee1291805a8d03991705e47
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6986
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Phages are unrecognized players in the ecology of the oral pathogen Porphyromonas gingivalis Matrishin,C.B., Haase,E.M., Dewhirst,F.E., Mark Welch,J.L., Miranda-Sanchez,F., Chen,T., MacFarland,D.C. and Kauffman,K.M. 2023 37491415 GenBank