Protein

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Genbank accession
AZF88795.1 [GenBank]
Protein name
DNA stabilization protein/tail needle
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MRNPERGQEINIPLLYGDGRSNKTLDWTTRLPENMLAVARQVKGGNGYMRIMPGIDKVADVDGISRGSEWNTVKMGPSRVMGGKLYLLGSPLADVSGVDRTPMAHSRDRIGIVTDNRLLMVGYDGTVTNFSNWTGEDAPIYSWGDINDVCHLRQRFIFSTKGTDTFWISDLEDETKPDKIAPAYRAESMPDGIVAIRSWHDYVVCFGSASIEFFGLTGDDQNVYANQPSYTVQAGTLGRETVCAYLDTFAFITSPFSGEYTIAIMQPGAAPTEIASAEVKKMLAGYTVEQLQAARLESLSYETHKLLIVHLPDKTLVYDHPVSQAQGVPVWSFLKTGILSLKPWRAIDVMNEGNRITVGDKTGKWLGALNNTHSAQYGEDQEIVLYTPILWAENAILADFRIDASTGGGSTTSRIWLSATEDGINYGQERTIAYNTPYRWLQNVILPVVGRVRSAIGFKLRTVGATPATLSRARVRVT
Physico‐chemical
properties
protein length:478 AA
molecular weight: 52765,15710 Da
isoelectric point:5,88809
aromaticity:0,09205
hydropathy:-0,22029

Domains

Domains [InterPro]
IPR021098
STR
11–477
IPR021098
AZF88795.1
1 478
Architecture
STR
STR 11-477 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AZF88795.1
1 478
Domain Start End Length (AA) Confidence
N-terminal 1 62 62 0,9867
Central domain 63 261 200 0,0261
C-terminal 262 478 216 0,3959
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-62
Central
63-261
C-terminal
262-478

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage Lumpael
[NCBI] 		2488859 Uroviricota > Caudoviricetes > Murrayvirus >
Host Salmonella enteritidis
[NCBI] 		149539 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AZF88795.1 [NCBI]
Genbank nucleotide accession
MK125141 [NCBI]
CDS location
range 31217 -> 32653
strand -
CDS
ATGAGGAACCCAGAGCGCGGGCAGGAGATTAACATCCCGTTACTGTACGGTGACGGGCGCAGTAATAAGACGCTGGACTGGACGACGCGACTCCCGGAGAACATGCTGGCGGTCGCCCGACAGGTCAAAGGCGGCAACGGCTACATGCGGATCATGCCGGGGATCGATAAGGTCGCCGACGTGGACGGGATCAGTCGTGGCTCGGAATGGAACACGGTCAAAATGGGACCTTCCCGCGTAATGGGTGGCAAGCTGTACCTCTTAGGCTCGCCGCTGGCGGACGTGTCCGGCGTGGACCGTACTCCTATGGCGCATAGCCGCGACAGGATCGGCATTGTGACCGATAACCGCCTGTTAATGGTCGGCTACGACGGGACTGTGACGAACTTCTCCAACTGGACCGGAGAGGACGCGCCGATTTACTCGTGGGGCGACATTAACGACGTTTGCCACCTCCGCCAGCGCTTCATCTTCTCCACGAAGGGGACGGACACCTTTTGGATCTCCGACCTGGAGGACGAGACGAAGCCGGACAAGATCGCCCCGGCGTATCGCGCTGAATCCATGCCGGACGGCATCGTGGCGATCCGCTCGTGGCATGACTATGTTGTGTGCTTCGGTAGCGCCTCGATCGAGTTCTTCGGCCTGACCGGGGACGATCAGAACGTCTACGCGAACCAGCCCTCCTACACCGTCCAGGCCGGAACGCTGGGACGTGAAACCGTTTGCGCCTATCTGGACACGTTCGCGTTTATTACGTCCCCATTCTCCGGGGAGTACACGATCGCCATCATGCAGCCCGGCGCGGCTCCGACGGAGATCGCCAGCGCGGAAGTTAAGAAGATGCTCGCCGGGTACACCGTGGAGCAGCTACAGGCGGCGCGACTGGAGTCACTCAGCTATGAAACGCATAAATTGCTTATTGTCCACCTACCGGACAAAACGCTGGTTTACGATCACCCCGTTAGCCAGGCCCAGGGCGTCCCGGTATGGTCATTCCTCAAGACGGGGATCCTCTCGCTTAAGCCGTGGCGGGCGATTGACGTCATGAACGAGGGCAACCGGATCACCGTCGGCGACAAGACGGGGAAATGGCTCGGAGCGCTGAACAATACCCACTCCGCGCAGTACGGCGAGGACCAGGAGATCGTCCTGTACACGCCGATCCTGTGGGCTGAAAATGCGATCCTCGCTGACTTTAGGATCGACGCTTCGACCGGGGGCGGCTCTACCACTTCCCGGATCTGGCTCTCCGCCACCGAGGACGGGATCAACTACGGGCAGGAGCGAACGATCGCTTATAACACGCCTTACCGCTGGCTACAGAACGTTATCTTGCCCGTTGTGGGCCGCGTCCGTTCCGCCATCGGCTTTAAACTTCGCACCGTTGGCGCGACCCCGGCGACTCTCTCGCGGGCGCGTGTCCGTGTGACCTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
7db596762066d25eb844164074a863775785555163e3560efb8aaa492eb68502
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8587
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A New High-Throughput Screening Method for Phages: Enabling Crude Isolation and Fast Identification of Diverse Phages with Therapeutic Potential Olsen,N.S., Hendriksen,N.B., Hansen,L.H. and Kot,W. 2020 — GenBank