Protein

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Genbank accession
YP_010106974.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MAHVTGTATNHFDLLARLRDFLVGNADLVAAGQQWEVIAGKATGAFVNGDYVSFRGKGLSATDDILCSIRVTSTPASNIHNWQLYGHTSYSLANPGVLQAGNPPNVPAMLLSSSAITYWFIANGRHFKVITRINGRYDAIYLGLILPDHTPNDWPYPMFVGGSGLNATLLASDDTSNHTNFYDPSAENSASVIGTAYLLVPGGNWRAVRNRWTNTSSIDGGVISMPWNAYYFPNATRRAIDGSAWLHRSMLCQIGDGAGVNTGGVVTGQAPDGGVWYGSFDGVFFVPAFGSSAEEIATQDGVDHILIPNIARTGNRNFAAIALD
Physico‐chemical
properties
protein length:324 AA
molecular weight: 34630,26050 Da
isoelectric point:5,78930
aromaticity:0,10802
hydropathy:-0,02068

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010106974.1
1 324
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,4136
Central domain 11 203 194 0,0014
C-terminal 204 324 120 0,9993
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-203
C-terminal
204-324

Taxonomy

  Name Taxonomy ID Lineage
Phage Xanthomonas phage FoX4
[NCBI] 		2723900 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Xanthomonas campestris pv. campestris
[NCBI] 		340 Bacteria > Proteobacteria > Gammaproteobacteria > Xanthomonadales > Xanthomonadaceae > Xanthomonas

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010106974.1 [NCBI]
Genbank nucleotide accession
NC_055839 [NCBI]
CDS location
range 27858 -> 28832
strand +
CDS
ATGGCACACGTAACGGGCACCGCAACAAACCACTTCGACCTGCTTGCGCGCCTGCGCGACTTCCTCGTCGGCAATGCCGACCTGGTGGCCGCGGGGCAGCAGTGGGAGGTGATCGCCGGCAAAGCCACTGGTGCATTCGTCAATGGCGATTACGTGTCGTTCCGCGGCAAGGGCTTGTCCGCCACTGACGACATCCTGTGTTCGATCCGCGTCACCTCGACGCCGGCAAGCAACATCCACAACTGGCAGTTGTACGGGCACACCAGCTACAGCCTGGCCAACCCAGGCGTGCTGCAGGCGGGCAATCCGCCGAACGTGCCTGCGATGCTGCTGTCCTCCTCCGCGATCACCTACTGGTTCATCGCCAACGGCCGGCACTTCAAGGTGATCACGCGCATCAATGGTCGCTACGACGCGATCTACCTCGGGCTGATCCTGCCGGACCACACGCCGAATGACTGGCCCTACCCGATGTTCGTGGGCGGATCCGGGCTCAATGCCACTCTACTGGCATCGGACGACACCTCGAACCACACCAACTTCTACGACCCTTCGGCCGAGAACAGCGCCAGCGTGATCGGAACGGCGTATCTGCTGGTGCCCGGTGGCAACTGGCGCGCGGTGCGCAATCGTTGGACGAACACTTCGTCGATCGATGGTGGCGTGATCTCGATGCCGTGGAATGCCTACTACTTCCCCAACGCCACCCGGCGCGCCATTGACGGCAGTGCCTGGCTGCACCGCAGCATGCTGTGCCAGATCGGCGATGGTGCAGGCGTCAACACCGGCGGCGTGGTCACAGGGCAGGCGCCAGATGGCGGTGTCTGGTATGGCTCATTTGACGGCGTTTTCTTCGTGCCGGCGTTCGGTTCCTCGGCAGAGGAGATCGCCACGCAAGACGGCGTCGACCACATTCTCATCCCGAACATCGCACGCACGGGCAACCGCAACTTCGCCGCTATCGCACTGGACTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
0a8542ec5ed9e3e2c07ac7d23507bb79d5f1aef17f030b8b2ea9c119ab0fe179
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7524
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Development of an integrated pest management strategy to control Xanthomonas campestris pv. campestris by using bacteriophages Holtappels,D., Rombouts,S., Lavigne,R. and Wagemans,J. 2022-01-27 — GenBank