Protein

View in Explore
Genbank accession
WQA18349.1 [GenBank]
Protein name
tail fibers protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,96
Protein sequence
MSSGCGDVLSLNDLQIAKKHQIFEAEVITGKQGGVAGGADIDYATNQVTGQTQKTLPAVLRDAGFSPASFNFTTGGTLGADDADKAVLWPIEDGGDGNYYVWRGSLPKVIPAASTPLTTGGISDSAWVAFGDITFRAEADKKFKYSVKLSDFTTLQQLADAAVDSVLIDRDYTFSNNETVNFGGKTLTIDCKAKFIGDGNLVFTQLGKGSIVIAPFMESATTPWVIKPWTDDNQWITDPAAIVATLKQSKTDGYQPTVNDYVKFPGIESLLPPEAKGQSISSTLEIRECTGVEVHRASGLMACFLFRGCHFCKMVDADNPSGGKDGVITFENLSGDWGKGNYVIGGRTSYGSVSSAQFLRNNGGFARDGGVIGFTSYRAGESGVKTWQGTVGSTTSRKQSSLKCV
Physico‐chemical
properties
protein length:405 AA
molecular weight: 43062,73060 Da
isoelectric point:5,26059
aromaticity:0,09630
hydropathy:-0,18691

Domains

Domains [InterPro]
G3DSA:2.10.10.80
ATT
65–135
G3DSA:2.10.10.80 IPR011050
IPR040775
RBD
93–132
IPR040775 IPR012332
IPR015331
RBD
138–398
IPR015331
WQA18349.1
1 405
Architecture
ATT
STR
ATT 65-135 | STR 136-400 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WQA18349.1
1 405
Domain Start End Length (AA) Confidence
N-terminal 1 155 155 0,9944
Central domain 156 393 239 0,9878
C-terminal 394 405 11 0,9181
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-155
Central
156-393
C-terminal
394-405

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage vB_SenS_TUMS_E6
[NCBI] 		3079603 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Salmonella enterica
[NCBI] 		28901 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WQA18349.1 [NCBI]
Genbank nucleotide accession
OR424354.1 [NCBI]
CDS location
range 23869 -> 25086
strand +
CDS
ATGTCCAGTGGTTGCGGTGATGTACTGTCACTTAACGATTTACAAATAGCCAAGAAACACCAGATTTTCGAAGCCGAGGTGATCACCGGCAAACAGGGCGGTGTAGCAGGCGGCGCAGATATCGACTACGCCACTAACCAGGTAACAGGGCAGACGCAGAAGACGCTGCCAGCGGTCTTACGTGACGCCGGTTTCTCTCCGGCATCTTTTAACTTCACAACCGGCGGGACCCTGGGAGCTGACGACGCGGATAAAGCGGTTCTTTGGCCTATTGAAGACGGCGGAGACGGTAACTATTACGTATGGCGCGGGTCACTCCCTAAAGTTATCCCTGCGGCGTCGACACCTCTTACGACGGGCGGCATTTCGGATTCCGCTTGGGTCGCGTTCGGGGATATCACCTTCCGTGCGGAAGCGGATAAGAAATTTAAATACTCCGTTAAGCTGTCCGACTTTACTACGTTACAACAATTGGCGGATGCCGCTGTTGATAGTGTTCTTATCGACCGCGATTACACTTTCAGCAATAACGAGACCGTTAACTTCGGTGGGAAGACCCTGACCATCGACTGTAAAGCGAAGTTTATTGGTGACGGAAACCTGGTATTTACGCAATTAGGTAAAGGTTCCATTGTAATAGCCCCCTTTATGGAGAGCGCTACAACGCCGTGGGTGATTAAACCGTGGACTGACGACAATCAGTGGATAACCGACCCCGCGGCAATCGTGGCCACACTTAAACAGTCTAAAACAGATGGATACCAGCCGACGGTAAACGATTATGTCAAGTTCCCTGGTATAGAATCCCTTCTCCCTCCGGAAGCTAAAGGGCAAAGCATATCTTCTACCCTGGAAATTAGGGAATGTACGGGCGTCGAGGTTCACCGGGCGAGTGGTCTTATGGCGTGTTTCCTGTTCCGCGGATGCCATTTCTGTAAGATGGTAGACGCTGACAACCCGAGCGGCGGAAAAGATGGCGTAATTACCTTTGAAAACCTGAGCGGCGATTGGGGCAAGGGTAACTATGTTATTGGCGGGCGCACAAGTTACGGTTCGGTAAGTAGCGCTCAATTCTTACGAAACAATGGCGGTTTCGCGCGCGATGGCGGGGTCATCGGGTTTACCTCGTATCGTGCAGGGGAAAGTGGTGTTAAGACGTGGCAAGGTACGGTAGGTTCTACGACATCTCGTAAGCAATCCTCTCTTAAATGCGTATGA

Genome Context

Genome Context

Tertiary structure

PDB ID
8a245bf6f44a040413ba4a864f01ebb8f98a95cc02cde1b72ffc7a38651be300
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7749
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation, Characterization, and Genome Analysis of Salmonella phage vB_SenS_TUMS_E6 Torkashvand,N., Kamyab,H., Shahverdi,A.R., Khoshayand,M.R., Karimi Torshizi,M.A. and Sepehrizadeh,Z. 2023-04-25 — GenBank