Protein

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Genbank accession
YP_008239656.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,96
Protein sequence
MSSGCGDVLSLADLQTAKKHQIFEAEVITGLQGGVAGGASIDYATNQVTGQVQKTMPAVLRDIGFYPASFDFSTGGTLTANDRNKVVYDLVSKTWYSWAGALPHVIAAGTNPVGAADWIPQTDPDLRSDLNTATAGKGADLVKFKTGTAVQRLVDSDGFNIIGKFAQVADLRSVASSAGMTVLVKEHTTGRGALGGGQFVAVAATIADDNGVYISSGTAGVTWVRKDAGSHVKIEWFGGKSEDSGIDHSPILANAQKTAGRSIEFQYGSYYFTPPCVIKPEMHFIGSGGAKTFWRNKNINADATVFFANTGTSSKWAENSIFERIHFSNDLATQATQSAFSMTNVGLFKFNNCGFYNSPIYASDLHFVTWNGCVFIKSPVTINEASVSPTFPINEMPSFIDCYMVESPIDITDVTDLHLNNTVMFYGPFGIKSTSHRPMQTGADSRGYPIMITNSTIDNIDGYCLDLNRVAIGTITNSLFSGGRVSNTAAIRLTEVMGLSFNSNVIHFAGQECMTLYDVQNLLMGNNQFSSCNGFAIKSQYARNVILNGNFFGNQKVTGGWNTCTGGVNFDTNDNLAWIITGNAFVGIPGVVGQTGNGRTVYTAVANAGLADN
Physico‐chemical
properties
protein length:613 AA
molecular weight: 65418,58570 Da
isoelectric point:5,66528
aromaticity:0,10277
hydropathy:-0,03883

Domains

Domains [InterPro]
DC_1596
STR
1–389
DC_1596 IPR039448
G3DSA:2.10.10.80
ATT
65–132
G3DSA:2.10.10.80 IPR012334
IPR040775
RBD
77–112
IPR040775 IPR011050
IPR011050
STR
369–595
IPR011050
YP_008239656.1
1 613
Architecture
STR
ATT
STR
STR 1-64 | ATT 65-132 | STR 133-595 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_008239656.1
1 613
Domain Start End Length (AA) Confidence
N-terminal 1 248 248 0,9926
Central domain 249 602 355 0,9958
C-terminal 603 613 10 0,4790
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-248
Central
249-602
C-terminal
603-613

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage FSL SP-031
[NCBI] 		1173749 Uroviricota > Caudoviricetes > Sarkviridae > Cornellvirus > Cornellvirus SP31
Host Salmonella enterica
[NCBI] 		28901 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales
Host Salmonella enterica subsp. enterica serovar Cerro
[NCBI] 		340188 Bacteria > Proteobacteria > Gammaproteobacteria > Enterobacteriales > Enterobacteriaceae > Salmonella

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_008239656.1 [NCBI]
Genbank nucleotide accession
NC_021775 [NCBI]
CDS location
range 40351 -> 42192
strand +
CDS
ATGTCAAGCGGATGCGGTGATGTTTTAAGTCTGGCGGATTTACAGACCGCCAAGAAGCACCAGATTTTTGAGGCCGAAGTTATCACCGGTTTGCAGGGTGGTGTTGCCGGTGGGGCGTCTATAGATTACGCGACGAATCAAGTTACAGGGCAGGTGCAGAAAACAATGCCTGCTGTTCTGCGCGATATCGGTTTTTATCCTGCTTCTTTCGATTTCTCTACAGGCGGCACACTGACGGCTAACGACCGTAATAAAGTGGTGTATGACCTGGTAAGTAAGACGTGGTACTCGTGGGCGGGGGCGTTGCCGCACGTCATCGCCGCGGGGACTAATCCGGTCGGTGCAGCGGACTGGATTCCGCAAACGGACCCCGATTTGAGGTCTGACTTAAACACCGCGACCGCGGGGAAAGGCGCAGACCTAGTTAAATTTAAGACGGGTACTGCGGTACAGCGCCTGGTAGACTCAGACGGATTTAACATCATTGGAAAATTCGCTCAGGTTGCCGATTTGCGCTCCGTTGCGTCTTCCGCCGGTATGACTGTCCTTGTCAAAGAACACACTACCGGCCGCGGCGCGCTCGGGGGCGGGCAGTTCGTTGCCGTAGCCGCCACAATAGCCGATGATAATGGTGTGTATATCTCTTCCGGTACGGCAGGAGTAACGTGGGTCCGCAAAGACGCAGGTTCTCATGTTAAAATAGAATGGTTTGGCGGGAAATCTGAAGACTCCGGTATCGACCATTCTCCTATCCTGGCTAATGCGCAGAAAACAGCAGGCCGCTCAATCGAGTTCCAGTACGGCAGCTATTATTTCACACCACCATGTGTCATCAAGCCAGAGATGCACTTCATTGGTAGTGGCGGGGCTAAAACGTTCTGGCGTAATAAAAACATAAATGCGGATGCCACTGTGTTTTTTGCTAACACTGGCACATCAAGCAAATGGGCTGAAAACTCTATTTTTGAAAGAATACACTTCAGTAATGATTTAGCTACTCAAGCAACCCAGTCAGCTTTCTCTATGACTAATGTTGGTCTTTTTAAATTTAATAATTGTGGTTTTTATAATTCCCCAATTTATGCATCAGACCTGCACTTTGTTACATGGAACGGATGCGTGTTCATAAAAAGTCCAGTAACAATTAATGAGGCTTCGGTTTCTCCAACATTTCCGATAAATGAAATGCCGTCATTCATAGATTGCTATATGGTTGAGTCACCTATAGATATAACTGATGTAACAGATCTGCATTTAAATAACACTGTTATGTTTTATGGCCCATTTGGTATAAAAAGTACATCCCACAGACCTATGCAGACTGGAGCGGATTCTCGCGGATATCCAATAATGATAACTAACAGTACCATTGATAACATTGATGGGTACTGCCTTGATTTAAACAGGGTAGCAATAGGGACTATTACAAACAGCTTGTTTAGCGGTGGAAGGGTAAGCAATACCGCAGCAATAAGACTTACAGAGGTTATGGGATTAAGTTTTAACTCTAACGTCATTCATTTTGCTGGGCAGGAATGCATGACGCTTTATGATGTTCAAAATTTACTAATGGGAAACAATCAGTTTAGTAGTTGCAATGGTTTCGCTATAAAATCACAATATGCAAGAAACGTAATATTAAATGGTAATTTCTTTGGAAATCAGAAGGTTACTGGAGGGTGGAATACCTGCACTGGAGGTGTAAACTTTGACACCAATGACAACTTGGCTTGGATAATAACTGGAAATGCATTTGTTGGTATACCAGGGGTTGTTGGGCAAACTGGAAATGGAAGAACAGTTTATACAGCGGTAGCTAACGCCGGACTCGCTGACAACTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
d7e138f00f29414ee32fe8338316028cc8f60584a6cf8a9ef68461787cccec20
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8486
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50