Protein

View in Explore
Genbank accession
QGZ13833.1 [GenBank]
Protein name
putative polysaccharidase
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,90
TSP
Evidence RBPdetect2
Probability 0,92
Protein sequence
MARKTIDELPVATPEAVATGSLLIADENGLEYRATTAIIGGVHLYFTAEDDQTPWVFGRLTSPGRTVEEITVTFVAVPRGGGTTLTKTVKTDSLGNFTYNFTTLLRGVTYDITASVAPYLSEVTVKYVAPLSVPITDPVATSTGKVGDTITISAPDFDGSPTSFKYRYLRGPNYIIPGASEPVYTLTPDDDADIITAQVLAVNAGGESIWYSANAIGPVSNKTSVAIDNPVITGNNTLGGRLELTSPGTATENAVVKSDEWQLDGVKIPSTKAPVKRYLGGAANGSAPTAYPSGNNHFGVGLSSNAYSGSNTYSYSVAANATENDYIALNVGTSGGNEGPQVYDLYMKHLNTNSAIRIKMYASRYNAGVRQGDEVQMAKVGATAGKEYSALAVTTNAVSRWTLTADFGEWLTGDYLVFRQQATNTSSSGSNNYQWDARTGVSYAMLPIGSVQDIQKTLKSFTSIADMGGKAARLKQVLSNGFNDVVLYSNEIVYEAAVTQTAVPSNITLPTVVAASDRANTTWQADLGAWSNQPTTYGVQWTDDGVDISGATLMNYKSTTAQEGHDITFYVIAENAIGFSEPAVAVARTVQAAATYYNIATGNDANDGSTELLAKQSLASTESIPSGSTAILAGDFGTRLKVGSSRNYEGLGAGLTFIGSLTTQYAIDHYTDDGSLGRSNVKISKMTLNSADRAILARQGSNWVLEDLVIDSAGFGAGVIAENASGIMFYRNNGITMRRCSLLNIKSDGLYLDTVDRVLIEDCLFMPVNTAEGDTIQTRADRTSSSGAPGPHQKGYVMSGTFLDMHSKKTASGKGCLVTNMADYVYCHDNSLDGNNFVAGTDEGDSHVFCRNTNRYARMNSYSFGYSIGGYDNQPASYNHQLYDNSWYDINRALTFSGISVTGYSGVKSGRVDIVAHDETIIKCASGVRIDRPTSGLFRGFVFHNVTRPIDRVLTTLPPGGEIQAFISDSHYIYNGSILMPPAVTTRAAISGDRTVGSELSGPNSVFDTTAVLTAFPGAVITRSYQWRRHKPQVQWSGWSQHLGWKCEWISGATSANYTITDDDQGCLISRVDRIHLSFTEASVAKVVSALSYDATYATSTPIPRSGDLAVPLPTIPTSGTVSLAAAEGVVVLNLPDLITGETRTFLNPSRSHEVYTGNLLTVDVNGDIVKGAGTFTSGQVFGMKLRQKRGIDTVDHVINFTVVA
Physico‐chemical
properties
protein length:1205 AA
molecular weight: 128603,71270 Da
isoelectric point:5,28576
aromaticity:0,08797
hydropathy:-0,15494

Domains

Domains [InterPro]
DC_1007
ATT
111–254
DC_1007 DC_1007 DC_0572
IPR036116
STR
494–589
IPR036116 DC_2223 G3DSA:2.60.40.2700
IPR003961
STR
503–593
IPR003961
IPR011050
STR
586–948
IPR011050
QGZ13833.1
1 1205
Architecture
ATT
ATT
STR
RBD
ATT 111-254 | ATT 486-614 | STR 615-948 | RBD 949-1205
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QGZ13833.1
1 1205
Domain Start End Length (AA) Confidence
N-terminal 1 232 232 0,9524
Central domain 233 431 200 0,4037
C-terminal 432 1205 773 0,2270
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-232
Central
233-431
C-terminal
432-1205

Taxonomy

  Name Taxonomy ID Lineage
Phage Rhizobium phage RL38J1
[NCBI] 		2663232 Uroviricota > Caudoviricetes > Pootjesviridae > Innesvirus RL38J1 >
Host Rhizobium leguminosarum
[NCBI] 		384 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Alphaproteobacteria > Hyphomicrobiales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QGZ13833.1 [NCBI]
Genbank nucleotide accession
MN549360 [NCBI]
CDS location
range 9514 -> 13131
strand +
CDS
ATGGCACGCAAAACAATCGATGAACTTCCAGTTGCGACTCCTGAAGCCGTAGCTACTGGGAGTTTGCTCATCGCTGATGAGAACGGATTGGAGTATCGAGCAACGACTGCCATCATCGGCGGCGTTCATCTGTACTTCACTGCTGAAGACGATCAGACCCCGTGGGTCTTTGGACGACTTACGAGTCCTGGCCGTACTGTCGAAGAAATCACTGTGACTTTCGTTGCTGTTCCTCGCGGAGGCGGTACGACTCTCACGAAGACTGTGAAGACAGACTCTCTCGGCAACTTCACGTACAACTTCACGACTCTTCTTCGTGGCGTTACATACGACATCACCGCGAGTGTTGCTCCGTATCTTTCTGAAGTAACAGTCAAGTACGTTGCTCCTCTGTCTGTTCCTATCACAGACCCGGTAGCAACTTCGACAGGTAAGGTCGGAGACACGATCACGATCTCTGCTCCTGACTTCGACGGCAGTCCTACATCATTCAAGTATCGATATCTCCGTGGTCCGAACTACATCATTCCTGGAGCAAGTGAACCGGTTTACACACTTACGCCTGACGACGACGCTGACATCATCACAGCTCAAGTTCTGGCAGTCAACGCAGGAGGCGAGAGCATCTGGTACAGCGCGAATGCGATCGGACCTGTCTCGAACAAGACATCAGTCGCGATCGACAACCCAGTCATCACTGGCAACAACACACTAGGCGGTCGTCTGGAACTTACGTCTCCTGGCACCGCGACTGAGAATGCTGTCGTCAAATCTGACGAATGGCAACTCGATGGAGTCAAGATTCCTTCGACGAAAGCACCTGTGAAGAGGTATCTCGGAGGTGCAGCGAACGGTTCAGCTCCGACAGCGTACCCTAGTGGCAATAACCACTTCGGCGTGGGTCTATCTTCGAATGCTTACAGCGGCTCGAACACCTACAGCTATTCTGTCGCTGCAAATGCGACTGAAAACGATTACATCGCATTGAATGTCGGAACTTCAGGCGGCAACGAAGGTCCTCAGGTCTACGATCTGTACATGAAGCACTTGAATACGAACTCAGCAATTCGCATCAAGATGTATGCTTCGAGATACAACGCAGGTGTACGTCAAGGCGACGAAGTCCAGATGGCAAAGGTCGGAGCTACCGCTGGAAAGGAATATTCAGCTCTCGCCGTCACAACAAACGCTGTGTCCAGATGGACTCTCACTGCAGACTTCGGCGAGTGGCTCACAGGCGACTATCTCGTCTTCCGTCAGCAAGCAACAAACACTTCGAGCTCTGGTTCGAACAACTATCAGTGGGACGCAAGAACTGGCGTGTCTTATGCCATGCTTCCGATCGGCTCTGTCCAAGACATCCAGAAAACTCTGAAGTCGTTCACCAGCATAGCTGACATGGGCGGTAAAGCTGCAAGACTCAAACAGGTTCTATCGAATGGTTTCAACGATGTCGTTCTGTACTCGAATGAAATCGTCTACGAAGCTGCTGTAACCCAGACTGCTGTTCCATCGAACATCACTCTTCCGACGGTCGTCGCTGCTTCCGACAGAGCGAATACCACGTGGCAAGCGGATCTTGGAGCATGGAGCAATCAGCCTACAACGTACGGCGTCCAGTGGACCGACGACGGCGTCGACATCTCCGGCGCAACTCTGATGAACTACAAGTCGACAACTGCTCAGGAAGGACACGACATCACCTTCTACGTGATCGCTGAAAATGCTATCGGCTTCTCTGAACCAGCCGTTGCTGTCGCAAGAACTGTTCAAGCGGCTGCCACGTACTATAACATTGCGACTGGTAACGATGCTAACGATGGTTCGACTGAACTGTTAGCAAAGCAGTCTTTGGCAAGCACGGAGTCGATCCCGTCTGGTTCGACTGCTATCCTCGCTGGTGACTTCGGTACTCGACTCAAGGTTGGCAGCAGCAGAAACTACGAAGGACTCGGTGCTGGTCTCACGTTCATCGGCTCACTCACGACTCAGTACGCAATCGACCACTACACCGACGACGGTTCGCTTGGTCGATCCAACGTCAAGATTTCGAAAATGACTCTGAATTCTGCTGACCGTGCTATTCTTGCACGCCAAGGTAGCAACTGGGTTCTCGAAGATCTCGTCATCGATAGTGCTGGTTTCGGCGCTGGCGTCATCGCTGAAAATGCTTCTGGCATCATGTTCTACAGGAACAACGGTATCACGATGCGTCGATGCTCGCTTTTGAACATCAAGTCTGACGGTCTCTATCTAGACACAGTCGACAGAGTCCTGATCGAAGACTGCCTCTTCATGCCTGTCAACACTGCAGAAGGTGATACGATCCAGACTCGCGCTGACAGAACTTCGAGTAGCGGTGCACCTGGTCCTCACCAAAAAGGCTACGTCATGAGTGGCACCTTCCTCGACATGCACTCGAAGAAGACTGCTTCTGGTAAGGGTTGCTTGGTCACCAACATGGCTGACTACGTCTACTGCCACGACAACAGCTTGGACGGCAACAACTTCGTCGCTGGTACTGACGAAGGTGACTCGCACGTCTTTTGCCGTAACACCAATCGTTACGCTCGAATGAACAGCTACTCGTTCGGCTACAGCATCGGTGGTTACGATAACCAGCCTGCGTCTTACAACCACCAGCTCTACGACAACTCCTGGTACGACATCAACCGTGCTCTGACTTTCAGCGGCATCTCGGTGACTGGCTATTCTGGCGTGAAGTCTGGTCGTGTAGACATCGTAGCTCACGACGAAACTATCATCAAGTGCGCATCTGGTGTTCGTATCGACCGCCCGACATCTGGTCTGTTCAGAGGTTTCGTCTTCCACAACGTGACGAGACCGATCGATCGAGTGCTTACGACTCTGCCTCCTGGCGGTGAGATCCAAGCGTTCATCTCTGACAGCCACTACATCTACAATGGTTCGATCCTCATGCCGCCGGCTGTTACGACTCGTGCAGCAATCTCCGGTGATCGAACTGTCGGTTCTGAACTTTCTGGTCCGAACAGTGTGTTCGATACGACTGCTGTCTTGACTGCATTCCCGGGTGCAGTGATTACTCGTTCGTATCAGTGGCGTAGACACAAGCCACAGGTTCAGTGGTCTGGCTGGTCTCAGCATCTCGGCTGGAAGTGTGAATGGATCTCTGGTGCAACGTCTGCGAACTACACGATCACTGACGACGATCAAGGTTGTCTCATCAGTCGTGTCGATCGTATCCACCTATCGTTCACGGAAGCAAGCGTAGCGAAAGTCGTATCGGCTCTCTCTTACGATGCAACATACGCGACTTCGACTCCGATCCCTCGCAGTGGTGATCTTGCTGTTCCGCTTCCGACAATTCCTACTTCAGGAACTGTGTCGCTTGCAGCAGCCGAAGGTGTAGTGGTTCTCAATCTTCCTGATCTCATTACTGGTGAGACAAGAACGTTCCTCAATCCTTCAAGATCTCATGAAGTCTACACAGGCAATCTACTTACTGTAGACGTCAACGGAGATATCGTGAAGGGCGCAGGCACATTCACTTCTGGTCAGGTGTTCGGCATGAAGCTCCGGCAGAAACGCGGAATCGATACGGTAGACCACGTCATCAACTTCACAGTCGTAGCGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
3a734496ca968c185787a4c2d04af2f20d6c4dc15b72eaea69dbeb7cfaeb38c1
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2724
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of bacteriophage vB_RLeM_RL38JI Gunathilake,D., Bhat,S., Yost,C.K. and Hynes,M.F. 2022-09-15 — GenBank