Protein

View in Explore
Genbank accession
QPZ53420.1 [GenBank]
Protein name
putative tail tubular B
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MPRTTLALSSFVSGEFSAKLDGRTDFDKYNSGVKTMENFLVHPQGAATRRVGTQHIAEVKDSSKKTRLIPFEFSTTQTYILEFGDQYMRVYKDKGQVLSGGSAFEISTPYLEAELFDIKFAQSADVLYLCHPNHDVRKLSRTGHTSWTLATVSFSGSPSLPISGSDNRPSCVSFFEQRLVFANTNNNPQTLWFSKSGDYENFTTGTNADDAMIYTIASNQVNAIQYLKAVRTLIVGTSGGEFTVSADGTDAAITPTNVTIKRQSSFGSAKVDAIPAGNAVLFLQKAKRKIRELAYNFDSDGYVAPDLTILNDTVTKTGINQMAFQQEPDSIIWCVREDGVLAGMTYQRSENVVAWHRHIFGGAFGNGNAVCESVASISGTLTEDEVWVIVKRTINGATKRYVECFSDFDFDETSATDFKFLDSHLSYSGSSTTTLSGLAHLEGQSVSILADGSVHANKTVSSGAITLDRAVTKACVGLSYDSVLQTMRIEGGAAEGTSQGKTKRISKVVLRLFETVGVKVGPSLSQLETVPFRTTSSNLSAPVDTLLAGDKEIEFRDDYNSDGFIFIKQDQPLPCSILAIYPTLVTSDG
Physico‐chemical
properties
protein length:589 AA
molecular weight: 64061,00070 Da
isoelectric point:5,50005
aromaticity:0,09338
hydropathy:-0,18421

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
QPZ53420.1
1 589
Domain Start End Length (AA) Confidence
N-terminal 1 576 576 0,7054
Central domain 577 578 3 0,0018
C-terminal 579 589 10 0,9800
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-576
Central
577-578
C-terminal
579-589

Taxonomy

  Name Taxonomy ID Lineage
Phage Pelagibacter phage HTVC028P
[NCBI] 		2796519 No lineage information
Host Candidadtus Pelagibacter sp. HTCC1062
[NCBI] 		198252 Pseudomonadota > Alphaproteobacteria > Candidatus Pelagibacterales > Candidatus Pelagibacteraceae > Candidatus Pelagibacter >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
QPZ53420.1 [NCBI]
Genbank nucleotide accession
MW273921 [NCBI]
CDS location
range 26415 -> 28184
strand -
CDS
ATGCCAAGAACAACATTAGCCTTATCATCATTTGTATCAGGAGAATTTTCTGCAAAGCTAGATGGAAGAACAGATTTTGATAAATATAATTCTGGTGTAAAAACTATGGAGAACTTTTTAGTTCATCCTCAAGGAGCTGCAACAAGAAGAGTTGGAACTCAACATATTGCAGAAGTTAAAGATAGTTCTAAGAAAACAAGATTAATACCTTTTGAGTTCTCAACTACTCAAACTTATATTTTAGAATTTGGCGATCAGTATATGCGTGTCTATAAAGACAAAGGACAAGTGTTATCTGGTGGATCTGCGTTTGAAATAAGTACACCTTATTTAGAAGCAGAATTATTTGATATTAAATTTGCTCAGTCTGCTGATGTTTTATATTTATGTCATCCTAATCATGATGTTAGAAAATTAAGTAGAACTGGACATACTTCATGGACCTTAGCAACAGTTTCATTTAGTGGCTCTCCTTCTCTACCAATTTCTGGATCTGATAATAGACCAAGCTGTGTTTCTTTCTTTGAACAAAGATTAGTTTTTGCAAACACAAATAATAATCCTCAAACTTTATGGTTTTCTAAATCTGGAGATTACGAAAATTTTACAACTGGAACTAATGCTGATGATGCTATGATTTATACAATCGCATCTAATCAGGTTAATGCCATTCAATATTTAAAAGCCGTAAGAACTTTAATTGTTGGAACATCAGGAGGCGAATTTACAGTTTCTGCTGATGGAACAGATGCAGCTATAACACCAACTAATGTAACTATTAAAAGACAGAGTTCTTTTGGATCTGCAAAAGTTGATGCTATTCCAGCTGGTAATGCAGTTTTGTTTTTACAAAAAGCTAAAAGAAAAATTAGAGAATTAGCTTACAACTTTGATTCAGATGGGTATGTCGCACCTGACTTAACTATCCTCAACGATACAGTTACAAAGACTGGAATAAATCAAATGGCATTCCAACAAGAACCAGACAGTATTATCTGGTGTGTAAGAGAAGATGGAGTGTTAGCTGGAATGACATATCAAAGATCTGAGAATGTTGTTGCTTGGCATAGACATATATTCGGTGGTGCTTTTGGTAATGGTAATGCAGTTTGTGAAAGTGTTGCATCAATATCAGGAACTTTAACAGAAGATGAAGTTTGGGTAATTGTAAAAAGAACAATCAATGGTGCTACAAAAAGATATGTAGAGTGTTTTTCTGATTTTGATTTTGATGAAACTTCTGCAACAGATTTTAAATTTTTAGATAGCCACCTCTCCTACTCTGGATCATCTACAACAACATTATCTGGATTAGCTCATTTAGAAGGTCAATCAGTATCAATCCTGGCAGATGGATCTGTACATGCAAATAAAACAGTAAGCTCAGGTGCAATCACATTAGATCGAGCAGTTACTAAAGCATGTGTTGGTTTATCTTACGATAGTGTTTTACAAACAATGAGAATTGAAGGTGGAGCTGCTGAAGGTACATCTCAAGGTAAAACAAAAAGAATTAGTAAAGTAGTATTAAGATTATTTGAAACTGTTGGTGTTAAAGTTGGACCAAGTTTATCACAATTAGAGACAGTTCCATTTAGAACAACATCAAGTAATTTATCAGCTCCAGTAGATACTCTTTTAGCTGGAGATAAAGAAATAGAATTTAGAGACGATTATAACTCAGATGGATTTATATTTATAAAACAAGATCAACCTTTGCCTTGTTCAATACTAGCAATATATCCAACTTTAGTTACATCGGATGGTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
8395b960c706458dcc69835bc9ea8b2e7da0b73ae57e1b658ccc592bdfb6ab4c
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,9317
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Genomic diversity, life strategies and ecology of marine HTVC010P-type pelagiphages Du,S., Qin,F., Zhang,Z. and Zhao,Y. — — GenBank