Protein

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Genbank accession
XMR01489.1 [GenBank]
Protein name
E3 ubiquitin-protein ligase HERC1
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MLPFARMVKYGNVREVTKIRKMVTDGTSGILFLTTSGKLYAAGPNTNGKFGDVTTSADKWTLIYENVDDFYYSPTWTFLKLKDGQYMCSGETTAFGYPTSNIFVNCSSIFNAVTGTIIDVQVNALRNCIGVLTNLGELWFIGTNTQYIFGMSTPSSSTSFVKNTIVSDVKSFKLMYANVWALTNSGVLYGSGNPNASQIPSSTGFTQIATGVLGYSATVAVVVLNTASGVFARGNVNNKYGTSVSGATATLVSCSLPFTYNAATFAFPKIVNNSSSVAARIIIQNGTDYYVSAVSDNYGFTSTNASFAPGPVPAFTKMINAPTSIEPIFFDSTYSSYYIENDICYVAGRLYPLPGYTTSDKALIYTEEKIVI
Physico‐chemical
properties
protein length:372 AA
molecular weight: 40083,88560 Da
isoelectric point:8,11298
aromaticity:0,13172
hydropathy:0,13172

Domains

Domains [InterPro]
DC_0433
ATT
1–180
DC_0433
IPR009091
STR
6–258
IPR009091
IPR009091
STR
22–234
IPR009091
DC_0918
STR
154–260
DC_0918
XMR01489.1
1 372
Architecture
ATT
STR
ATT 1-180 | STR 181-260 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XMR01489.1
1 372
Domain Start End Length (AA) Confidence
N-terminal 1 54 54 0,0342
Central domain 55 271 218 0,4785
C-terminal 272 372 100 0,4519
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-54
Central
55-271
C-terminal
272-372

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage Turkey3
[NCBI] 		3375710 Viruses >
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XMR01489.1 [NCBI]
Genbank nucleotide accession
PQ471515 [NCBI]
CDS location
range 341293 -> 342411
strand -
CDS
ATGTTACCTTTTGCAAGAATGGTTAAGTACGGAAATGTAAGAGAAGTTACGAAAATACGTAAAATGGTCACGGACGGAACTAGTGGTATTTTATTCTTAACAACAAGTGGTAAATTATATGCTGCGGGACCAAATACAAATGGTAAGTTTGGTGATGTTACTACATCGGCTGATAAGTGGACTTTGATATATGAAAATGTTGATGACTTTTACTATTCACCTACGTGGACATTTTTAAAACTCAAAGACGGTCAGTATATGTGCAGCGGTGAAACTACTGCATTTGGTTATCCAACAAGTAATATATTTGTTAATTGTAGTTCGATTTTTAATGCAGTAACTGGTACAATAATTGATGTTCAAGTTAATGCGTTACGTAACTGTATAGGGGTACTGACAAACTTAGGAGAATTGTGGTTCATTGGTACGAATACGCAATATATATTTGGAATGAGCACACCAAGTAGTAGTACATCTTTTGTTAAAAATACGATAGTCAGTGATGTCAAGTCATTCAAATTAATGTATGCAAACGTATGGGCATTAACTAATTCTGGTGTTCTTTATGGTTCTGGAAACCCAAACGCTAGTCAAATACCTAGTTCCACTGGGTTTACCCAAATTGCAACAGGGGTTTTGGGTTATTCAGCAACAGTTGCTGTTGTAGTGCTTAATACCGCTAGTGGTGTATTTGCCAGAGGAAACGTCAACAATAAATATGGAACATCAGTGTCTGGTGCAACTGCAACTTTAGTTTCTTGTTCGTTACCATTCACATATAATGCAGCCACATTTGCATTTCCTAAAATCGTTAATAATAGTAGTTCGGTTGCAGCAAGAATAATAATCCAGAATGGAACCGATTATTATGTGTCCGCAGTTTCCGATAATTATGGGTTTACCAGTACAAATGCAAGTTTTGCACCTGGTCCGGTTCCAGCATTTACTAAGATGATCAATGCACCAACTTCAATAGAGCCTATATTCTTTGACAGTACATATTCATCATATTATATAGAAAATGACATATGTTATGTTGCAGGTAGATTGTATCCTTTACCTGGATACACTACCTCAGATAAAGCATTAATATATACTGAAGAAAAAATAGTAATATAG

Genome Context

Genome Context

Tertiary structure

PDB ID
fe6d38561084a4b10968e1e004115d06fb7156d33089c0075b9970f2cdf58eee
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8430
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Transient expression effect of genes from a Jumbo E. coli phage Petrzik,K. and Brazdova,S. 2023-07-26 — GenBank