Protein

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Genbank accession
YP_010302220.1 [GenBank]
Protein name
virion structural protein
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TF
Evidence RBPdetect2
Probability 0,94
Protein sequence
MRTGNLDLMLGAQIKNFRPEVLAADPAVGDLVASQEARIWYNSVDKKYKYFDGTEIKEFGAGGGSVEGAILADGTVAMTADLELSGPDQSASGDNAAVSKKHVETVVATKQDKISGLTENGVVIAGADSELQTSNVTAAELGYLSGASSNIQSQITAVSNKANANETALAGKLDAANGKLTGDLDADGNTIANLAAPANPNDAARKIDIDNAIAGIDWLHDSDAIQEDGTLDPELVAGKQYIILAADQINPNFGSITGLVDNMIVRYNGTAFEIVFDPTDSEAGGAVTWVKAIKEYRRFDGTIWTTFGGASEFNAGDGLEKAGNVVNVKVGAGVQIVSNAVTAKLDAAGGLEDNAGSTRVKLDGSSLSRTVDGIAIAEGGVGYAEVSPAALGTGLKQDVDNSKIIVDVAAVKTAGGFIDATGGDVEALNLTGTDPLTDTSAVSKKYVDDAIAGSTGGAAAKLYQYDKTAAGDAAATAHTFTHNAGVKYGTVTVVDDTGYQIIPDEIVFIDANSLRVELTTAKKVAIAFVTGTNAYVEPEA
Physico‐chemical
properties
protein length:540 AA
molecular weight: 55382,61860 Da
isoelectric point:4,36406
aromaticity:0,05741
hydropathy:-0,05907

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010302220.1
1 540
Domain Start End Length (AA) Confidence
N-terminal 1 404 404 0,9237
Central domain 405 529 126 0,0988
C-terminal 530 540 10 0,9918
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-404
Central
405-529
C-terminal
530-540

Taxonomy

  Name Taxonomy ID Lineage
Phage Erwinia phage pEa_SNUABM_1
[NCBI] 		2869543 Uroviricota > Caudoviricetes > Alexandravirus >
Host Erwinia amylovora
[NCBI] 		552 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010302220.1 [NCBI]
Genbank nucleotide accession
NC_061448 [NCBI]
CDS location
range 62430 -> 64052
strand -
CDS
ATGCGTACTGGTAATCTTGATTTAATGCTCGGCGCTCAGATTAAGAACTTCCGTCCAGAAGTTCTGGCTGCCGACCCGGCTGTTGGCGATCTGGTTGCATCGCAAGAAGCCCGTATCTGGTACAACAGCGTCGATAAGAAGTACAAATACTTCGACGGTACTGAAATCAAAGAGTTCGGCGCTGGTGGCGGTTCAGTAGAAGGTGCAATCCTTGCTGACGGTACCGTGGCGATGACTGCTGACCTCGAACTGTCTGGTCCTGACCAGTCTGCTTCTGGTGATAACGCTGCTGTCTCTAAGAAACACGTTGAGACTGTTGTTGCTACCAAGCAAGACAAAATCTCCGGCCTGACTGAGAACGGCGTTGTGATTGCTGGCGCTGATAGCGAACTGCAAACCTCCAACGTTACTGCTGCTGAACTGGGTTATCTGTCCGGCGCAAGCTCTAACATCCAGTCTCAGATCACCGCTGTTAGCAACAAAGCTAACGCGAACGAAACTGCGCTGGCGGGTAAACTGGACGCTGCTAATGGCAAGCTGACCGGTGACCTCGACGCAGACGGCAATACCATTGCTAACCTGGCTGCTCCTGCTAACCCGAACGACGCTGCGCGTAAGATCGATATTGACAACGCTATCGCTGGCATCGACTGGCTGCACGACTCTGACGCGATTCAGGAAGACGGTACTCTCGACCCAGAGCTGGTAGCTGGCAAGCAGTACATCATTCTGGCCGCTGACCAGATCAACCCGAACTTCGGTAGCATCACCGGTCTGGTTGACAACATGATCGTGCGCTACAACGGCACAGCGTTCGAAATCGTATTCGACCCGACTGACAGCGAAGCTGGCGGTGCTGTGACCTGGGTTAAAGCGATCAAAGAATATCGTCGCTTCGACGGTACTATCTGGACTACCTTCGGCGGTGCTTCTGAGTTTAACGCTGGTGACGGTCTGGAAAAAGCTGGCAACGTCGTTAACGTTAAAGTTGGCGCTGGTGTTCAGATCGTTAGCAACGCTGTTACTGCGAAGCTAGATGCTGCTGGTGGTCTGGAAGATAATGCCGGTTCTACTCGCGTTAAACTGGACGGCTCTAGTCTGTCTCGTACCGTTGACGGTATCGCAATCGCAGAAGGCGGTGTTGGTTACGCAGAAGTTTCTCCTGCTGCCCTCGGCACTGGCCTGAAACAGGACGTCGATAACAGCAAAATCATCGTTGACGTTGCTGCGGTTAAAACTGCTGGTGGCTTCATCGACGCAACTGGCGGTGATGTTGAAGCGCTGAACCTGACTGGTACTGACCCGCTGACCGACACTTCTGCTGTGAGCAAGAAGTACGTTGACGACGCTATCGCTGGTTCTACTGGTGGCGCTGCTGCTAAACTGTACCAGTACGATAAGACTGCTGCTGGTGATGCTGCTGCGACTGCGCACACCTTCACACACAACGCTGGCGTTAAGTACGGTACTGTTACCGTTGTTGATGACACTGGTTATCAGATCATCCCTGATGAAATCGTGTTCATCGACGCTAACAGCCTGCGTGTCGAGCTGACTACTGCGAAGAAAGTCGCAATCGCATTCGTAACTGGTACTAACGCCTACGTTGAACCAGAAGCGTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
03cbdde8ff9304a53f39ec54e018b380dcae90c15f40dc8408ed7d0e439efc77
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7240
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of Erwinia phage pEa_SNUABM_1 Kim,S.G. and Park,S.C. 2021-01-07 — GenBank