Protein

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Genbank accession
YP_009792788.1 [GenBank]
Protein name
tail collar fiber protein
RBP type
TF
Evidence RBPdetect
Probability 0,90
TF
Evidence RBPdetect2
Probability 0,89
Protein sequence
MGRLNYDQSPAQYVPTAAAGDSSSAVASTAFVQNAVPAGVVLPYAGPLPPEGWMLCDGSAVSRTTYAKLFAAIGTTYGAGNGTTTFNLPEARGEFIRGLDQGRGVDSGRALGTAQQDALQNITGTIQPRPLAGAGGGAIGGATGAGAFDLSIKGGAPGASSITTGTAANTDVLTFDASRVARTAAETRPRNVAMNYIIKFA
Physico‐chemical
properties
protein length:201 AA
molecular weight: 20144,22130 Da
isoelectric point:7,84388
aromaticity:0,06965
hydropathy:-0,01343

Domains

Domains [InterPro]
DC_1413
STR
20–201
DC_1413
IPR037053
ATT
25–92
IPR037053
SSF88874
STR
32–200
SSF88874
IPR011083
ATT
39–96
IPR011083
YP_009792788.1
1 201
Architecture
ATT
STR
ATT 20-96 | STR 97-201
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Bordetella phage vB_BbrM_PHB04
[NCBI] 		2029657 Uroviricota > Caudoviricetes > Phabquatrovirus >
Host Bordetella bronchiseptica
[NCBI] 		518 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Betaproteobacteria > Burkholderiales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009792788.1 [NCBI]
Genbank nucleotide accession
NC_047861 [NCBI]
CDS location
range 92560 -> 93165
strand -
CDS
ATGGGGCGCCTGAACTACGATCAATCGCCGGCGCAGTACGTGCCGACGGCGGCCGCCGGGGACTCGTCGAGCGCTGTCGCTTCGACCGCCTTCGTGCAGAACGCCGTGCCGGCCGGCGTCGTGCTGCCCTATGCGGGCCCGCTGCCGCCGGAAGGCTGGATGCTGTGCGACGGGTCTGCTGTGAGCCGCACGACCTACGCGAAGCTGTTCGCGGCCATCGGCACGACCTATGGCGCGGGCAACGGCACGACCACGTTCAATCTTCCCGAGGCCCGGGGTGAATTCATTCGCGGGCTGGACCAGGGGCGAGGGGTGGACTCGGGGCGAGCGCTGGGGACTGCCCAGCAGGACGCGTTGCAAAACATCACGGGAACCATCCAGCCACGACCGCTGGCTGGAGCGGGCGGTGGAGCAATTGGTGGAGCGACCGGTGCTGGCGCCTTCGATCTGTCCATCAAGGGAGGAGCGCCAGGAGCGTCCTCTATCACTACCGGCACTGCAGCCAATACCGACGTGCTTACGTTCGATGCCTCGCGCGTGGCTCGGACTGCTGCTGAAACTCGCCCGCGCAACGTCGCCATGAACTACATCATCAAATTCGCATAG

Genome Context

Genome Context

Tertiary structure

PDB ID
3420c2b02d8ac40015c4586c2603af8fb21811405b237e4b141eb73c4959ab24
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7478
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of a novel bacteriophage infecting Bordetella bronchiseptica Chen,Y., Song,J. and Wu,B. 2018-09-18 — GenBank