Protein

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Genbank accession
URC22523.1 [GenBank]
Protein name
receptor-binding protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MSVFMGKFSDGKTVLSLRNRGGTAWGEDAWEHHDPQLDSIFHSDMPHMFIEEYYAANTWHAGDGYFITPMPSRVVETLANAADRVVITSVTFRSNEGDEYKSAISGNSINFGTALQGRASQVGSWQNGYNTVSSGIWFSSFNQSADVTLDVGYFWYDTNNSFKTMLSHGSSRRIFWHAETVHNSNTNGGGRPPNPFAVDYWYMAGFMFFDSDGSGVPGYNGPANNNTSWYATKPNVIRNFHVDWWRPPTSRGTGYSAIYIRMGMPRLLVGSFQRGGWVPEGGEWLVNESANNSAGPQGGSWICRSWTGNPIDAAWDNVGAKEIKDQIQWGWTPVQVEWYFTNFWFNGSDGYNVSNIFTGNDILFSRDNFTVKGQNLMNVGRKMVMAVDAGESARNWRDVHIGSNVYKWDLNSNPINFLGGIPKSFAKKGWCGMAAVDGGTFSNFGPASIAIHEFVPGKQWYLDGTVPSIGNQDGDIWSPSSVPLKNFEWNKSAFWLGGQSVWSDQNNMTWLAEADIGFASSRAGTGLIMVQFHDLPSYMSCGGFGSFMPLRALGPNVPMDNTWMNVVGNMDARPQRFFNISVIPPNCHVPVFTVRNGITNDNISDPFIYIRDGANNHMLNEVLYYSMTLWIHNNADGKVSLWVSVSRNDPANRAPRVKFRIPGMYVHVQKLT
Physico‐chemical
properties
protein length:672 AA
molecular weight: 74988,80640 Da
isoelectric point:6,14744
aromaticity:0,13988
hydropathy:-0,35952

Domains

Domains [InterPro]
IPR059609
RBD
1–672
IPR059609
URC22523.1
1 672
Architecture
RBD
RBD 1-672
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
URC22523.1
1 672
Domain Start End Length (AA) Confidence
N-terminal 1 307 307 0,0012
Central domain 308 506 200 0,7149
C-terminal 507 672 165 0,9188
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-307
Central
308-506
C-terminal
507-672

Taxonomy

  Name Taxonomy ID Lineage
Phage Serratia phage vB_SmaM-Kamaji
[NCBI] 		2943833 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Serratia marcescens
[NCBI] 		615 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
URC22523.1 [NCBI]
Genbank nucleotide accession
ON287373 [NCBI]
CDS location
range 40111 -> 42129
strand +
CDS
ATGTCAGTCTTCATGGGTAAATTTAGCGATGGTAAGACTGTACTATCGTTACGTAATAGAGGAGGAACTGCTTGGGGAGAAGATGCGTGGGAACACCATGATCCTCAGTTAGACAGTATCTTCCATAGTGACATGCCTCACATGTTTATTGAGGAATACTACGCAGCTAATACTTGGCATGCAGGAGATGGCTACTTTATAACCCCAATGCCTTCTAGGGTAGTAGAGACTCTGGCTAATGCTGCGGATAGAGTGGTAATTACCTCTGTCACATTTAGAAGTAATGAGGGAGACGAATACAAAAGTGCTATTAGTGGTAACTCTATCAACTTTGGTACTGCATTACAAGGCAGGGCCTCTCAGGTAGGTAGCTGGCAAAACGGTTACAACACAGTTTCTTCCGGCATATGGTTCAGTAGTTTTAACCAGAGTGCCGATGTTACTCTAGATGTTGGGTATTTCTGGTATGATACTAATAATAGTTTTAAAACTATGTTATCTCACGGTAGCTCTAGAAGAATATTCTGGCATGCTGAAACTGTGCACAACAGTAATACTAACGGTGGTGGTCGTCCTCCTAACCCATTCGCTGTTGATTACTGGTACATGGCTGGGTTTATGTTCTTTGATAGTGATGGTAGTGGAGTTCCAGGATACAATGGTCCTGCTAATAACAATACAAGTTGGTATGCAACTAAACCTAACGTTATTCGTAACTTCCACGTAGATTGGTGGAGACCGCCTACTTCTAGAGGTACTGGATACAGTGCTATATACATACGTATGGGAATGCCAAGGTTGCTAGTGGGTAGTTTCCAGCGTGGTGGCTGGGTTCCTGAAGGCGGAGAGTGGCTGGTTAATGAGTCAGCCAATAATAGTGCTGGTCCTCAGGGTGGGTCATGGATATGTAGAAGTTGGACTGGTAATCCTATTGATGCTGCCTGGGATAACGTAGGTGCCAAAGAAATCAAAGACCAAATACAATGGGGCTGGACTCCAGTACAAGTTGAATGGTACTTTACTAATTTCTGGTTCAATGGAAGTGATGGATATAACGTCAGTAATATTTTCACTGGAAACGATATATTATTTAGTAGAGATAACTTCACAGTTAAGGGCCAGAACTTAATGAATGTAGGTCGTAAGATGGTTATGGCTGTCGATGCGGGGGAGTCAGCAAGAAACTGGAGAGATGTTCACATTGGTAGTAATGTGTACAAATGGGATTTAAATAGTAATCCTATTAACTTCCTAGGTGGTATTCCTAAGTCATTTGCCAAGAAGGGTTGGTGCGGTATGGCAGCTGTAGATGGAGGCACTTTCTCTAACTTTGGACCTGCTTCCATAGCAATACATGAATTTGTTCCTGGTAAGCAATGGTATTTAGATGGTACGGTACCTTCTATTGGTAACCAGGATGGCGATATCTGGAGTCCTAGCTCTGTACCTCTGAAAAACTTTGAATGGAATAAGTCTGCCTTCTGGCTTGGTGGTCAGTCAGTATGGTCTGATCAAAATAACATGACGTGGCTAGCAGAGGCCGATATAGGGTTTGCTAGCTCCAGAGCAGGTACTGGGCTGATAATGGTACAGTTCCATGACTTACCTTCGTACATGAGTTGTGGTGGATTTGGTAGTTTCATGCCTTTACGTGCATTAGGACCTAACGTGCCTATGGATAATACGTGGATGAATGTAGTTGGTAACATGGATGCTAGACCTCAAAGGTTCTTCAACATTTCAGTTATACCACCGAATTGCCATGTTCCAGTGTTTACTGTTAGGAATGGTATAACTAATGATAATATCTCGGATCCATTTATTTATATACGTGATGGTGCAAATAACCACATGTTAAATGAGGTACTATACTACTCCATGACACTGTGGATCCATAACAACGCTGATGGTAAGGTATCCCTGTGGGTATCTGTTTCCCGTAACGATCCTGCTAACAGGGCACCACGAGTTAAATTCAGAATACCTGGCATGTATGTGCATGTACAAAAGCTAACTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
7d5dea01f0e483d533b69c2b5922415d3778ee809b4cdbbad714b1caae267d74
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,2124
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50