Protein

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Genbank accession
YP_010668427.1 [GenBank]
Protein name
virion structural protein
RBP type
TSP
Evidence RBPdetect
Probability 0,90
Protein sequence
MFSNAPKATSNDGGVVPGNKPSIGNNDGRKAVHYIEQIFDPDIHPIELMSKYIVPEEGELVVDMPNHVFYEVEHVDRHATWKTTLGPWNPIPEASGNDYTLFPKHEYGFLQGEMALMIDYSVRPPVARVDANCVAPNAAYAHLYNGDVFQDTDIISATYSGVDFIDNKIPVSPVVLDNFENLTIMGANTFSVQRSDKELPNGSRCSLIFKDQAGRPIPPIYPLAVQHCSHLRDHELGTRYVKSIELISPWFTNTSNPKTLFIRINVLLKTVEFRARVHYSDGTSSDPVPVNTFNGNNGFKLLGLDQWKPTVPGQSSDSLVLTYAFAEHEQAYMAQPGQPRHMSEKYTIVAVPGEGTYTPRIYSYPYWDNMNGWKLKHFLTDLDRKYCRDVTDIVTLNESSPAFDGRKYGEEQNLIFNLNMRDVSASYEPWSFMQHTSPTLYNDATAEGRKWDVRHSRGKPPFVSMTVEYIAQAGGGVKAKFAGIANDKEFLDKGYWAFDPLMDPLTEIKAPTPTHFDLVRVNGSVRTGIPIAGWKELPIDAFSLTPGEGLFIRWVRRESDGNELQLGVSAAVSKKVSVFS
Physico‐chemical
properties
protein length:580 AA
molecular weight: 65000,51430 Da
isoelectric point:5,67147
aromaticity:0,11034
hydropathy:-0,38259

Domains

Domains [InterPro]
DC_1319
STR
1–580
DC_1319
YP_010668427.1
1 580
Architecture
STR
STR 1-580
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010668427.1
1 580
Domain Start End Length (AA) Confidence
N-terminal 1 21 21 0,7822
Central domain 22 225 205 0,8808
C-terminal 226 580 354 0,6133
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-21
Central
22-225
C-terminal
226-580

Taxonomy

  Name Taxonomy ID Lineage
Phage Aeromonas phage LAh10
[NCBI] 		2591025 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Aeromonas hydrophila
[NCBI] 		644 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Aeromonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010668427.1 [NCBI]
Genbank nucleotide accession
NC_070956 [NCBI]
CDS location
range 204295 -> 206037
strand +
CDS
ATGTTTAGTAACGCACCTAAAGCCACCAGTAATGACGGTGGTGTCGTTCCGGGTAACAAACCCAGCATCGGTAATAATGACGGTCGCAAGGCCGTCCATTATATCGAGCAAATTTTCGATCCCGATATTCACCCCATCGAGCTGATGTCCAAGTACATCGTTCCTGAAGAGGGTGAACTCGTAGTAGACATGCCGAACCATGTTTTCTACGAGGTAGAACATGTGGATCGTCACGCCACTTGGAAAACGACCCTTGGTCCTTGGAACCCGATTCCCGAGGCCAGTGGTAATGACTACACCCTGTTCCCGAAACACGAATACGGTTTCTTGCAGGGTGAAATGGCACTGATGATCGATTACAGTGTCCGTCCTCCTGTGGCTCGGGTCGATGCAAACTGTGTCGCTCCTAATGCAGCATACGCTCATCTCTATAACGGTGATGTGTTCCAGGATACTGACATTATTTCAGCCACTTATTCTGGTGTTGATTTTATCGACAACAAAATCCCGGTATCTCCGGTTGTTCTCGATAACTTCGAAAACCTCACCATCATGGGTGCGAATACGTTCTCTGTCCAACGAAGTGATAAGGAACTCCCTAACGGTTCACGGTGTAGCCTGATCTTCAAGGATCAAGCGGGTCGACCGATCCCACCCATCTATCCGTTGGCTGTTCAGCACTGCTCTCATCTCCGTGACCATGAGCTGGGTACCCGCTACGTTAAGAGCATTGAACTCATCTCTCCATGGTTCACCAACACGTCTAATCCGAAGACCCTGTTTATCAGGATCAACGTATTGCTGAAGACGGTTGAGTTCCGTGCACGAGTTCACTACTCCGATGGTACTTCTTCTGATCCGGTTCCTGTGAATACCTTCAACGGTAATAACGGGTTCAAGCTCTTGGGTCTGGACCAGTGGAAACCGACCGTACCTGGCCAGTCTTCTGACAGCCTGGTTCTGACGTATGCGTTCGCTGAGCACGAGCAGGCTTACATGGCCCAACCTGGTCAGCCTCGTCACATGTCCGAGAAGTACACCATCGTTGCTGTCCCGGGTGAGGGCACGTACACTCCGCGTATCTACTCCTACCCGTATTGGGATAACATGAACGGTTGGAAGTTGAAACACTTCCTGACTGACCTGGATCGCAAGTACTGTCGTGACGTCACTGACATTGTCACACTGAACGAATCCAGTCCTGCGTTTGATGGTCGTAAGTATGGTGAAGAGCAGAACTTGATCTTTAACCTGAACATGCGTGACGTTTCCGCTAGCTATGAACCCTGGTCGTTCATGCAACATACCTCTCCAACGTTGTACAACGATGCAACAGCGGAAGGACGTAAGTGGGATGTTCGTCACTCTCGGGGCAAGCCACCGTTCGTGTCGATGACTGTTGAGTACATTGCTCAAGCTGGTGGTGGTGTTAAGGCCAAGTTCGCCGGGATTGCCAATGACAAAGAGTTCCTTGATAAAGGTTACTGGGCATTCGATCCTCTTATGGATCCGCTCACTGAAATCAAGGCTCCGACACCGACCCACTTCGATCTCGTTCGGGTCAATGGTTCTGTTCGGACCGGTATTCCTATTGCTGGCTGGAAAGAACTTCCCATCGATGCGTTCAGTCTCACTCCGGGTGAAGGTCTCTTCATTCGTTGGGTACGTCGTGAATCCGATGGCAATGAACTCCAACTCGGTGTTTCTGCTGCTGTCAGTAAGAAAGTCTCTGTGTTCTCATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
0b8b0544651ae6c71c89fa75101d1228ab6703f999cfe8e6a2638096d894c451
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,3874
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Novel bacteriophages capable of disrupting biofilms from clinical strains of Aeromonas hydrophila with intrinsic antibiotic resistance Kabwe,M., Brown,T.L., Speirs,L., Ku,H., Leach,M., Chan,H.T., Petrovski,S., Lock,P. and Tucci,J. 2020-02-14 — GenBank