Protein

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Genbank accession
WBK39778.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,90
TSP
Evidence RBPdetect2
Probability 0,94
Protein sequence
MTTEIDINQPTDDVLVSDLPSYIRANKIILQELLSTNAISTNTQTITLDNPDILVDGTVSIVFLQSPYDVSINTINFDTSSLVILFALNDGITILDNIGNIKLQGDTNNPEFPMEQGDVLVLLCQDGENATEIYRELNQDAPLGDDGRIRTIQKLLVSGHNVADHIEDVTIHFTIDDSDTTSLDIVWSASKLESKFNNINGSQIVPSSIPPVALDSIDIPDADRDGFVLVYNHSANQFEWEDVSGVVGNDTYRVKWNEADTSEFLDDKLPIIEFPIPEFDGHYYTVDAYGVGYWSPGLPKLEDIGPRELIRTNDDGSGFMPGAVLDDISSHTNQLLQVADSPSFPSGKDQGRIIPGAIFPTLSEISNKVRGDSLVINEDKTGFTIKSVAYDTIPVYIWIDPTNGNDSNNGTESNLPVKTFAKARDIGVALAGYAGRELYFYIVDGIHTNSDSFRDVSFGSSKVTIKGVSLTSTQLTVSNGFKFLPFTDVHMEDFTVTGNGGDNTYGLHLEGARVYVHGVGFNNFFGGAQVANGSQMLTGFKNVFLGNNENGIYCHNNSHANLGGSPFNSLNAKTPGQGQGINCQYNSSVHAHYVYISQFLYGVSVVHHSWVDVSYGTFFNCTNNGSIPLTLSSETSPTKRAFNSYIMAHNIEIESS
Physico‐chemical
properties
protein length:656 AA
molecular weight: 71608,37150 Da
isoelectric point:4,42170
aromaticity:0,09451
hydropathy:-0,19939

Domains

Domains [InterPro]
DC_1786
RBD
8–135
DC_1786 DC_0805
IPR011050
STR
394–625
IPR011050
WBK39778.1
1 656
Architecture
RBD
RBD
STR
RBD 8-135 | RBD 365-393 | STR 394-625 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WBK39778.1
1 656
Domain Start End Length (AA) Confidence
N-terminal 1 447 447 0,9473
Central domain 448 645 199 0,8104
C-terminal 646 656 10 0,2519
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-447
Central
448-645
C-terminal
646-656

Taxonomy

  Name Taxonomy ID Lineage
Phage Desulfofustis phage LS06-2018-MD01
[NCBI] 		3003834 No lineage information
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WBK39778.1 [NCBI]
Genbank nucleotide accession
OP947158.1 [NCBI]
CDS location
range 37139 -> 39109
strand -
CDS
ATGACTACTGAAATAGATATTAACCAACCTACTGATGATGTTCTTGTGTCAGATTTGCCTAGTTATATTAGGGCTAATAAAATTATTCTTCAAGAATTATTATCTACTAATGCTATTTCAACTAACACTCAAACTATAACTTTAGATAATCCTGATATATTAGTAGATGGTACTGTTTCTATAGTATTTCTACAATCACCTTATGATGTTTCTATCAATACGATAAATTTTGATACTTCAAGTTTAGTAATTTTATTTGCTTTGAATGATGGAATTACTATCTTAGATAATATTGGAAACATTAAACTTCAAGGTGATACTAACAATCCTGAATTTCCTATGGAACAAGGTGATGTGTTAGTACTTCTTTGTCAAGATGGTGAAAATGCTACTGAAATTTATAGAGAGTTAAATCAAGATGCTCCATTAGGAGACGATGGTAGGATAAGGACTATTCAAAAACTCTTAGTATCTGGCCATAATGTAGCAGATCATATAGAAGATGTTACTATTCATTTTACTATAGATGATAGTGATACTACCTCTCTTGATATTGTTTGGTCTGCTAGTAAATTAGAAAGTAAATTTAATAATATTAATGGAAGTCAGATAGTTCCTAGCTCTATTCCTCCAGTAGCACTAGATTCCATTGATATTCCTGATGCAGATAGAGATGGATTTGTTTTAGTGTATAATCATTCTGCTAATCAATTCGAGTGGGAAGATGTATCTGGTGTAGTGGGTAATGATACTTATCGAGTAAAGTGGAATGAGGCTGATACTTCTGAATTTTTAGACGATAAACTTCCTATTATTGAATTTCCTATTCCAGAGTTTGATGGACATTACTACACTGTAGATGCTTATGGAGTAGGTTATTGGTCTCCTGGATTACCTAAACTAGAAGATATCGGCCCTAGGGAGTTAATCAGAACTAACGATGATGGTTCTGGATTTATGCCTGGAGCAGTACTGGATGATATTTCTTCTCATACTAATCAACTTCTTCAAGTAGCTGACAGTCCTTCTTTTCCTAGTGGTAAAGATCAAGGTAGAATTATTCCTGGTGCTATTTTTCCTACTTTGAGTGAAATTAGTAATAAAGTAAGAGGAGATTCATTAGTAATAAACGAGGATAAGACAGGGTTTACTATTAAATCAGTAGCTTACGACACTATTCCTGTCTATATTTGGATTGATCCTACTAATGGTAATGATAGTAATAATGGAACTGAATCTAATCTGCCAGTTAAAACTTTTGCTAAAGCTAGAGATATTGGTGTAGCTCTTGCTGGTTATGCTGGTAGAGAACTTTATTTTTATATCGTAGATGGAATTCACACTAATAGTGATTCTTTTCGTGATGTATCTTTTGGGTCGTCGAAAGTTACTATTAAAGGTGTTAGTCTTACTAGCACACAATTGACAGTTTCAAATGGATTTAAATTCCTACCATTTACTGATGTTCATATGGAAGATTTTACAGTAACTGGTAATGGTGGTGATAATACTTATGGTTTACATCTTGAGGGTGCAAGAGTTTATGTGCATGGAGTAGGATTTAATAATTTTTTTGGAGGTGCACAAGTTGCTAATGGTTCACAGATGCTTACAGGCTTTAAAAATGTGTTTCTTGGTAACAATGAAAATGGAATATATTGTCATAATAATAGCCACGCAAACTTAGGTGGATCACCTTTTAATAGTTTAAATGCTAAAACTCCAGGACAAGGGCAAGGTATTAATTGTCAGTATAATTCTTCTGTTCATGCTCATTATGTTTATATATCTCAATTTTTGTATGGTGTTTCAGTAGTTCATCATTCATGGGTTGATGTTTCTTATGGTACGTTTTTTAATTGTACTAATAATGGCTCTATCCCTCTTACTTTATCATCAGAAACTTCACCTACTAAACGAGCATTTAATAGTTATATCATGGCCCATAATATTGAGATTGAATCTAGTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
65ea0c386ac50476577355c2402c251b8a419dccc98ad4b806dd594f179b6399
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6377
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Horizontal gene transfer and CRISPR targeting drive phage-bacterial host interactions and co-evolution in pink berry marine microbial aggregates Kosmopolous,J.C., Campbell,D.E., Whitaker,R.J. and Wilbanks,E.G. — — GenBank