Protein

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Genbank accession
WCD56172.1 [GenBank]
Protein name
tail tubular protein B
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MAKVSGAYDTVVRGVSEQVPQDRRPGQHHEQINQISDPVRGNARRPGSVLQVEQAKTAYTAPLWAKWLTDTRYHKTLPFQIGGVEYDISYRTKADTQALGNTTFAFAYNKTTKTPVPVVMGAGTAALQSGGVSAIVSVGKYLFIAGNTVVPTYTGTDTWGSTANRQKMAVQFRGGAYSRTFRVKLTKTDNTTIEKTYKTKSSSYPTPLDTSDILSSDPQYQGKINERTAQYNSAVTQWIGSAAADQTPENLATQFAALFTAAGVTGVTAVAGTLCIDNPLYNEVLAEDSGDGSLVRAVGGVVTNVDLVSGVHYPGKIVKVRPKKASQEDALYLRAVAKDPAITSAFTEVTWMEGAGYEMQPTNVFAIATVVGGTLYIGATPAELQSISGDATPTFSKNLVGDQITAPLPYFMNRRIDYLGVFQDRLVIGSGATLFFSRPGDYFNWYRTTVLAIEPNDPLEIAALNAEDDTIKHSTTYDRNLLLFGQNNQYTINGRQTMDPRQPPSIVVQSSYEDAVDAAPVNSGNFVFYTDTHADYTSMHQIQLGAIADNPESYNVTNQLDHYISGKPVEIVPLTNPNCIFLRTDGARNRLYTFAYLDTATGAERLFDSWSRWEWDVDHVGSIVGMSRYEGDLLVHMIKQDGANIWYAVERFSLDTGLSPRPYADSLRPAAGPLANTGFIKTTSPAAPHSYIAFGTGVYRFLGTTLDRHDSFVTDYPTASSEAFVGVHFDGSFTPTNPYMRDSQGKAIVNGRLTLTKVIVSVSDSGGMVVDLESAKGTIRVTDWIGRTLNRANNLIGRASIATGNVSAPIGREVRECKYTIKSKTFLPLTVTAIEWVGQYFNNLRRVN
Physico‐chemical
properties
protein length:848 AA
molecular weight: 92530,62840 Da
isoelectric point:6,38765
aromaticity:0,09906
hydropathy:-0,25330

Domains

Domains [InterPro]
IPR058003
TTP
1–55
IPR058003 IPR058003
DC_0058
STR
1–848
DC_0058
WCD56172.1
1 848
Architecture
STR
STR 1-848
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WCD56172.1
1 848
Domain Start End Length (AA) Confidence
N-terminal 1 149 149 0,7827
Central domain 150 348 200 0,3723
C-terminal 349 848 499 0,2811
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-149
Central
150-348
C-terminal
349-848

Taxonomy

  Name Taxonomy ID Lineage
Phage Caulobacter phage KSC
[NCBI] 		3020398 Uroviricota > Caudoviricetes > Autographivirales > Percyvirus > Percyvirus KSC
Host Caulobacter crescentus
[NCBI] 		155892 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Alphaproteobacteria > Caulobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WCD56172.1 [NCBI]
Genbank nucleotide accession
OQ135104 [NCBI]
CDS location
range 24972 -> 27518
strand +
CDS
ATGGCGAAAGTCTCAGGCGCTTACGATACCGTCGTGCGCGGCGTGTCGGAACAGGTCCCTCAAGACCGACGCCCTGGCCAGCACCACGAGCAGATCAACCAGATTTCGGACCCGGTGCGTGGCAACGCTCGGCGTCCGGGGTCTGTCCTGCAAGTCGAGCAAGCCAAGACGGCTTACACCGCCCCTCTCTGGGCGAAGTGGCTTACCGACACTCGGTACCACAAAACGCTACCCTTCCAGATCGGAGGGGTCGAGTACGACATCTCGTATCGTACCAAGGCGGACACGCAAGCGCTGGGTAACACCACGTTCGCGTTCGCCTACAACAAGACAACCAAGACCCCCGTCCCTGTCGTCATGGGTGCGGGTACGGCTGCCCTACAATCTGGTGGCGTCTCTGCCATCGTGAGCGTGGGCAAGTACCTGTTCATCGCTGGGAATACCGTGGTCCCTACCTACACCGGTACGGACACGTGGGGCTCTACCGCAAACCGCCAGAAGATGGCTGTGCAGTTCCGTGGTGGCGCGTACTCGCGCACCTTCCGTGTCAAGCTGACCAAGACGGACAACACCACCATCGAGAAGACGTACAAGACCAAGTCATCTTCGTATCCCACGCCTCTGGACACCTCGGACATCCTGTCGAGCGACCCGCAGTACCAGGGCAAGATCAACGAGCGTACGGCTCAGTACAACTCGGCAGTCACGCAGTGGATTGGGTCGGCTGCGGCTGACCAGACCCCGGAGAACCTCGCCACACAGTTCGCTGCCCTGTTCACTGCCGCTGGCGTCACGGGTGTCACGGCGGTGGCTGGTACGCTCTGCATCGACAACCCTCTGTACAACGAGGTGCTGGCCGAGGACAGCGGCGACGGCTCGCTAGTCCGCGCTGTCGGCGGTGTGGTTACCAACGTGGACCTCGTGTCCGGCGTCCACTATCCAGGCAAGATCGTAAAGGTGCGGCCCAAGAAGGCGTCCCAGGAAGACGCCCTGTATCTTCGGGCTGTGGCCAAAGACCCCGCCATCACGTCCGCGTTCACTGAGGTGACGTGGATGGAAGGGGCGGGTTACGAGATGCAGCCTACCAACGTGTTCGCTATTGCGACCGTGGTCGGCGGAACCCTGTACATCGGGGCTACCCCTGCGGAACTCCAGTCGATCAGCGGGGACGCCACGCCTACGTTCAGCAAGAACCTAGTTGGTGACCAGATCACTGCGCCGCTGCCGTACTTCATGAACCGGCGTATCGACTACCTTGGGGTCTTCCAAGATCGCCTCGTAATCGGCTCAGGTGCTACGCTGTTCTTCTCCAGGCCTGGGGACTACTTCAACTGGTACCGAACTACGGTGCTGGCCATCGAGCCCAACGACCCGCTGGAGATCGCCGCGCTCAACGCGGAAGACGACACCATCAAGCACAGCACGACCTACGATCGGAACCTGTTGCTGTTCGGACAGAACAATCAGTACACCATCAACGGTCGTCAGACTATGGACCCACGACAGCCTCCGAGCATCGTTGTGCAGTCCAGCTACGAGGACGCGGTTGACGCCGCGCCGGTGAACTCGGGGAACTTCGTGTTCTATACGGACACGCACGCCGACTACACGTCGATGCACCAAATCCAACTTGGCGCTATCGCGGATAACCCGGAAAGCTACAACGTCACCAACCAGCTCGATCACTACATCTCCGGTAAGCCGGTGGAGATCGTGCCCCTGACGAACCCCAACTGTATCTTCCTCCGTACTGACGGAGCGAGGAACCGCCTATACACATTTGCCTACCTAGACACTGCTACGGGGGCTGAACGCCTCTTCGATAGCTGGAGCCGGTGGGAGTGGGACGTGGACCATGTCGGCAGTATCGTCGGCATGTCTCGGTATGAGGGTGACCTGCTGGTCCATATGATCAAACAGGATGGGGCCAACATCTGGTACGCGGTAGAGCGCTTCTCCCTGGACACGGGGCTTAGCCCACGGCCGTACGCGGATAGCCTGCGCCCTGCGGCGGGTCCCCTAGCCAACACCGGGTTCATCAAGACGACCTCGCCTGCTGCCCCGCACTCGTACATCGCGTTCGGGACTGGTGTGTACCGCTTCCTGGGCACCACCCTGGATCGGCACGACAGCTTTGTGACCGACTACCCGACCGCCTCTAGCGAGGCCTTTGTGGGCGTACACTTTGACGGCTCCTTCACTCCGACTAACCCGTACATGCGGGACAGTCAGGGCAAGGCTATCGTCAATGGCAGGCTCACGCTGACCAAGGTGATCGTCTCGGTTTCCGACAGTGGCGGTATGGTCGTGGACCTGGAAAGCGCCAAGGGCACTATCCGAGTGACCGACTGGATTGGCCGTACGCTTAACCGTGCGAACAACCTCATTGGCCGTGCGTCTATCGCTACCGGCAACGTGTCTGCTCCAATCGGCCGAGAGGTCAGGGAGTGTAAGTACACGATCAAGTCTAAGACGTTCCTCCCTCTTACGGTCACGGCCATCGAGTGGGTCGGGCAATACTTCAACAATCTGCGTAGGGTGAACTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
60e3102a3b545c12d1764613651da19a76dbdc60d8fd6c356acbdb4295833286
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2960
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
New Genera and Species of Caulobacter and Brevundimonas Bacteriophages Provide Insights into Phage Genome Evolution Ely,B., Hils,M., Clarke,A., Albert,M., Holness,N., Lenski,J. and Mohammadi,T. 2024 — GenBank