Protein

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Genbank accession
XOD31758.1 [GenBank]
Protein name
long-tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,89
Protein sequence
MADLKVGSTVGGSVIWHQGNFPLNSAGDDVLYKSFKIYSEYNKPQAADNDLVSKANGGTYLNKVIFNKGMTVPGAGSGDNGIFAVPCDNATYDTTNMDIVSCYGIGFKSSQGTAGRTVVINTRNGDISSKGVIEASQIRATSLSPLNNYDLTRKDYVDGAINIVTANANSRVLRSGDNMTGNLTAPNLF
Physico‐chemical
properties
protein length:189 AA
molecular weight: 19976,01580 Da
isoelectric point:6,54759
aromaticity:0,07937
hydropathy:-0,24709

Domains

Domains [InterPro]
DC_0466
STR
1–189
DC_0466
IPR005601
STR
56–180
IPR005601
XOD31758.1
1 189
Architecture
STR
STR 1-189
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XOD31758.1
1 189
Domain Start End Length (AA) Confidence
N-terminal 1 74 74 0,4364
Central domain 75 178 105 0,3283
C-terminal 179 189 10 0,7895
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-74
Central
75-178
C-terminal
179-189

Taxonomy

  Name Taxonomy ID Lineage
Phage Shigella phage sb1
[NCBI] 		3387546 Viruses >
Host Shigella flexneri
[NCBI] 		623 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XOD31758.1 [NCBI]
Genbank nucleotide accession
PQ666539.1 [NCBI]
CDS location
range 156663 -> 157232
strand +
CDS
ATGGCTGATTTAAAAGTAGGTTCAACTGTGGGTGGATCTGTCATTTGGCATCAAGGAAATTTTCCATTGAATTCAGCCGGTGACGATGTACTCTACAAATCATTTAAAATATATTCAGAATATAATAAACCACAGGCAGCTGATAATGATTTAGTTTCTAAAGCTAATGGTGGCACGTATTTAAATAAAGTAATTTTTAATAAAGGAATGACTGTTCCCGGTGCAGGGTCAGGTGACAATGGTATTTTTGCTGTTCCTTGTGATAATGCCACATATGATACTACAAATATGGATATTGTTTCGTGTTATGGTATTGGTTTTAAATCATCACAAGGAACAGCAGGTAGAACTGTAGTAATTAACACACGAAATGGAGATATTAGCTCAAAGGGCGTAATTGAAGCATCGCAAATACGCGCAACTTCATTATCTCCATTAAATAATTATGACCTCACGCGGAAAGATTATGTCGATGGAGCAATAAATATTGTTACAGCAAACGCAAACTCTAGAGTATTACGCTCTGGAGATAATATGACAGGTAACTTAACCGCGCCAAACCTTTTTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
0358236170df7ddb1b9453431d04612d0a0a1e38c3733fc34a5d09c0157ead3b
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7314
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50