Protein

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Genbank accession
YAF81076.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MANKPTQPLFPLGLETSESSNIKGFNNSGTIEHSPGAVMTFPEDTEVTGLPSSVRYNPDSDEFEGYYENGGWLSLGGGGIRWETLPYAPSSNLLEGRGYLINNTTGTSTVVLPSPTRVGDSVTICDAYGKFATYPLTVSPAGNNLYGSTEDMTISTDNVSATFTWSGAEQGWVVTSGVGLGQGRVYSREIFTQILASETSAVTLNTPPTIVDVYADGKRLAESKYSLDGNVITFDPSLPASTELQVIEYTPIQLGTGGGGSGASAITWIYNGGSAIGGETEITLDVVVDDVPAIDINGSRQYKNLGFTFDPLTSKITLAQELDAEDEVVVIINGTPNIYNQIDYTLREVARVTNVKDTEVVYFSVGAVLSGYKVIYDKVTQRSYFIPELPNGTTAVSLSSSAVLVHSAGSVDLGALAVSREEYVTLSGSFDSGAVINVKNELLTHTDGKYRWDGALPKTVDAGSTPASTGGIGVGKWLSVGDAALRTNLASYNGFSLIGVCPDVITLRTLSVPIGKKVLLLGYHSDHPGTGGGTLYASSDTSLADDGVRVFVTSDGTRLVRETNGELYASWAGAVGDWNGTTGTDNKEAIERLITASGTEFKWVIDLTNIGVSSVVIDNKNNWNGHINGSVINISAKPAAGAVDRKDQDGGLLPTIKITNSDGWKLTGSFVDNRYREAFYVEYCDNFELGCANLGSGINNNLAANHFRYCNHFKLNGWKVEKSGVIPLAGYYDWVQAIRMWDCSGFIIDGLTSHMNAGNGIYIASNCKDYVVTNFDITENAMSGIQLAWSGFGVMPIRGVISNGTITGNRADSIDVNNTSGIKARLDLIISGVINANNGYNSDGTVTADGSGLGTFINVSHFIVDECSSTSPARSGVAISNCSNFRVKGIIKKDQPSNSDGHGVYIENSADGEIDVDCITDSANANMYSIRTYGALENIHLSGKYVGYTLFGDDATYVNCSLDKASIISPTTVANRFPWENVNVVVSGSNAVDIKSTVNSCRFVSNNGHGGVLSSGNNDISDSEFYGTDGGLYCADNIGQVRVRGGVAQGGSAAGLRISGGEKHIIEGLTTKSTSGNSCVITNASKVIYIGNDDSANPTNFTGTTFTLQN
Physico‐chemical
properties
protein length:1110 AA
molecular weight: 117440,71880 Da
isoelectric point:4,67486
aromaticity:0,08468
hydropathy:-0,12649

Domains

Domains [InterPro]
DC_1946
ATT
1–686
DC_1946 IPR012334 DC_0586
G3DSA:3.30.2020.50
ATT
338–422
G3DSA:3.30.2020.50 G3DSA:2.10.10.80 IPR011050 IPR006626 IPR006626 IPR006626
IPR040775
RBD
417–482
IPR040775 IPR006626 IPR006626 IPR006626
YAF81076.1
1 1110
Architecture
ATT
STR
RBD
ATT 1-686 | STR 687-964 | RBD 965-1110
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YAF81076.1
1 1110
Domain Start End Length (AA) Confidence
N-terminal 1 581 581 0,9958
Central domain 582 1099 519 0,9946
C-terminal 1100 1110 10 0,2376
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-581
Central
582-1099
C-terminal
1100-1110

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage CBDS-02
[NCBI] 		3459906 Viruses >
Host Salmonella enterica
[NCBI] 		28901 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YAF81076.1 [NCBI]
Genbank nucleotide accession
PX104388.1 [NCBI]
CDS location
range 140170 -> 143502
strand +
CDS
ATGGCCAACAAACCAACACAGCCTCTTTTCCCTTTGGGTTTAGAAACTTCTGAGTCTTCGAACATAAAAGGCTTCAACAACTCCGGCACTATTGAGCATTCCCCTGGTGCCGTAATGACATTTCCTGAAGATACTGAAGTTACAGGTCTTCCATCTTCTGTGCGTTACAATCCTGATAGTGATGAATTTGAAGGTTATTACGAAAACGGTGGTTGGTTGTCTTTGGGTGGCGGCGGAATACGCTGGGAAACGCTCCCTTACGCTCCCTCTAGCAATTTGTTAGAAGGTCGCGGCTATCTCATTAATAATACGACAGGGACTTCTACAGTGGTTCTCCCTTCCCCTACGCGCGTTGGTGACTCGGTTACAATTTGTGATGCCTATGGGAAATTCGCGACGTATCCATTGACCGTATCTCCAGCGGGAAATAACCTGTACGGCTCCACCGAAGATATGACGATATCCACCGATAACGTGTCGGCGACTTTCACTTGGTCTGGTGCCGAGCAGGGTTGGGTTGTTACATCTGGTGTTGGCCTCGGCCAAGGTCGTGTGTACAGTCGTGAGATTTTCACTCAAATTTTAGCATCTGAAACAAGTGCTGTCACTCTCAATACTCCACCAACAATCGTGGACGTGTATGCTGACGGAAAACGTCTTGCGGAATCCAAATATTCACTAGATGGGAATGTAATCACTTTCGACCCTTCTTTACCTGCCAGCACTGAATTGCAGGTAATAGAATATACTCCGATTCAGTTAGGCACTGGCGGCGGGGGTTCGGGCGCTTCTGCAATCACCTGGATTTACAATGGCGGATCCGCTATCGGTGGCGAAACCGAAATCACGTTGGACGTCGTTGTTGATGATGTTCCGGCCATTGATATAAACGGAAGTCGCCAGTATAAAAATCTGGGGTTCACATTCGATCCATTAACCAGTAAAATCACTCTTGCGCAAGAACTGGATGCAGAGGATGAAGTTGTTGTAATTATCAATGGAACGCCAAACATCTATAATCAAATTGATTATACTTTGCGGGAAGTGGCTCGTGTAACCAATGTTAAAGATACAGAGGTCGTTTATTTTAGTGTTGGTGCTGTGTTAAGCGGGTATAAAGTTATCTATGATAAAGTAACACAGAGATCATATTTTATTCCAGAGCTACCGAATGGAACCACGGCAGTCAGCCTTAGTTCTTCGGCTGTGCTTGTGCATTCTGCTGGTAGTGTTGATCTGGGCGCATTAGCTGTATCTCGTGAAGAATATGTTACATTGTCTGGTTCATTTGATTCTGGTGCTGTCATCAATGTTAAAAATGAATTACTTACTCATACAGATGGTAAGTATCGTTGGGATGGGGCATTACCTAAAACTGTCGATGCTGGATCAACGCCTGCATCAACTGGTGGCATCGGCGTAGGGAAGTGGTTAAGCGTTGGCGATGCGGCATTACGAACTAATTTAGCTTCTTATAATGGTTTTTCCCTGATTGGTGTGTGTCCTGATGTAATCACGTTGCGAACGCTTTCCGTACCAATTGGTAAGAAAGTATTGTTGCTCGGATATCATTCAGATCATCCTGGCACTGGCGGCGGAACCCTTTACGCCTCAAGTGATACATCACTAGCTGATGATGGTGTACGTGTTTTTGTCACATCAGATGGAACCCGTTTGGTAAGAGAGACTAATGGGGAGTTATATGCCTCATGGGCAGGTGCTGTTGGTGACTGGAACGGAACTACTGGCACAGATAATAAGGAAGCAATAGAACGGCTTATCACAGCATCAGGGACTGAATTTAAATGGGTTATTGATTTAACGAATATTGGCGTAAGTTCTGTCGTTATTGATAACAAAAATAACTGGAATGGGCATATAAACGGCAGTGTAATCAATATTTCAGCTAAGCCAGCTGCCGGTGCCGTAGACAGAAAAGATCAGGATGGTGGATTGCTACCAACCATTAAAATTACAAACTCTGATGGCTGGAAATTAACAGGTTCTTTTGTCGACAATCGTTATCGTGAGGCTTTCTATGTAGAATACTGCGATAACTTTGAACTAGGCTGCGCAAACCTTGGTAGTGGAATTAACAATAATCTTGCGGCTAACCATTTCAGATACTGTAACCATTTTAAGTTAAATGGATGGAAGGTTGAAAAGTCGGGGGTTATTCCACTTGCAGGTTATTACGATTGGGTTCAAGCTATAAGGATGTGGGACTGCTCTGGATTTATCATTGATGGATTAACATCACACATGAATGCAGGTAATGGTATTTATATCGCCAGTAACTGCAAAGACTATGTTGTTACTAACTTTGACATAACAGAAAACGCCATGTCAGGAATACAGCTCGCTTGGTCAGGTTTTGGTGTAATGCCAATTAGAGGTGTTATCTCTAACGGAACCATCACTGGAAACAGGGCTGACAGTATAGACGTTAACAATACCAGCGGTATCAAAGCGAGACTTGATCTGATAATTTCCGGTGTTATAAATGCAAACAATGGTTACAACTCTGACGGAACGGTAACTGCCGACGGTTCTGGTTTGGGTACATTTATTAATGTTTCCCATTTCATAGTTGACGAGTGCTCTTCAACATCGCCAGCCCGCTCTGGAGTAGCTATAAGTAACTGCTCCAATTTCAGAGTAAAAGGTATTATAAAAAAAGACCAGCCATCTAATAGTGATGGACATGGGGTATACATTGAAAACAGCGCTGATGGTGAAATAGACGTTGACTGTATTACTGACTCTGCTAACGCAAACATGTACTCCATACGAACTTACGGGGCGCTTGAAAACATACACCTTTCAGGCAAATATGTTGGATATACCTTGTTTGGAGATGATGCAACTTATGTTAACTGCTCTCTTGATAAAGCGTCAATAATTTCCCCGACTACAGTCGCAAATCGTTTCCCATGGGAAAATGTGAACGTAGTTGTTTCTGGTTCAAATGCTGTTGATATCAAATCAACAGTGAATAGTTGCCGATTTGTTTCTAACAATGGTCATGGGGGTGTGTTGTCTTCAGGTAACAACGATATTTCTGACTCAGAATTCTATGGAACAGATGGTGGACTTTACTGTGCTGACAACATTGGTCAGGTTAGGGTTAGAGGTGGTGTAGCCCAGGGTGGCTCAGCAGCAGGACTACGAATTAGTGGTGGTGAAAAGCATATCATTGAAGGGTTAACCACAAAATCAACATCAGGCAACTCCTGTGTTATCACCAATGCTTCCAAAGTGATATACATTGGAAATGATGACTCTGCTAACCCAACAAACTTTACAGGAACAACATTTACACTTCAGAACTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
0800607cb356cb099636573de7dc153fb9f91c0f8040bd78b9754da1b748ea85
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,8146
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A machine learning approach to predict strain-specific phage-host interactions Camejo,P.Y., Leon,L.E., Rojas,F., Ossa,A., Hurtado,R., Tichy,D., Pieringer,C., Pino,M., Mora-Uribe,P., Ulloa,S., Norambuena,R., Tobar-Calfucoy,E., Aguilera,M., Rojas-Martinez,V., Cifuentes,O., Sabag,A., Cifuentes,N., San Martin,D., Infante,C., Cifuentes,P. and Pieringer,H. — — GenBank