Protein

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Genbank accession
XPO95113.1 [GenBank]
Protein name
pectate lyase 3 domain-containing protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,94
Protein sequence
MSTIYDKTDNYALNLYGDNDPADLRDGYNGSMHTIDDTLEKHLNRIESVESREAHDEEVTKALLGDNTVDAATAAKTKWDKAGTDATAAASKADGNTQALTALGVETAEKAAKFAHEITSNCNVVLHGIPNDASYSVSDLINAYIKDNPFNGVYFPAGTYHLDKTIDIPKNTTNPFTFYAEPNAKFVATANMTDMFDFGAYSENGEKTYGATITGGVYDCAGLCDNCWSFEQDVYGVSVSNMTVKGAKVASFYAKRTQALDMLFTNIRVNMLKESADSQYGFYLNGTDCQFVNVYTTYCHTHFKCNGGGMMFDTVHSFNNPSFQNAVCYDLANGVYFGNNIYIDTIAIGVQSKYIDAYFTNVYHYTYAELDTDTVTFKVSYNARLRCDGLYARFLEDSHAATPLVGVKNDQYTFNFENVKFSNVDTYGDNCLMPVMPNYGKSSYHSSLFYGVTDSSNGYIPIGVLYEEMAQSISVFTSKSLEPYGEVTIEIDNLSDIYVRNMTFSKDSIKYSTNGFLYDVNSCFPICVSDSKTNKLGLRYRVIYLKNTTTLSNSYKNITIHPNRTGITLFPKGGVATEPPIIAAQTTPVIKTIAAQ
Physico‐chemical
properties
protein length:596 AA
molecular weight: 65913,64540 Da
isoelectric point:4,96656
aromaticity:0,12416
hydropathy:-0,29195

Domains

Domains [InterPro]
DC_1277
STR
1–178
DC_1277
IPR011050
STR
122–424
IPR011050
IPR012334
STR
132–440
IPR012334
XPO95113.1
1 596
Architecture
STR
STR 1-440 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XPO95113.1
1 596
Domain Start End Length (AA) Confidence
N-terminal 1 137 137 0,9935
Central domain 138 466 330 0,9795
C-terminal 467 596 129 0,9050
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-137
Central
138-466
C-terminal
467-596

Taxonomy

  Name Taxonomy ID Lineage
Phage Bifidobacterium phage BP1
[NCBI] 		3385233 Viruses >
Host Bifidobacterium pseudocatenulatum
[NCBI] 		28026 cellular organisms > Bacteria > Bacillati > Actinomycetota > Actinomycetes > Bifidobacteriales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XPO95113.1 [NCBI]
Genbank nucleotide accession
PQ571273 [NCBI]
CDS location
range 4327 -> 6117
strand -
CDS
ATGAGCACCATTTACGATAAAACCGACAATTACGCGCTAAATCTGTATGGCGACAATGATCCCGCCGACTTGCGCGACGGATACAACGGCAGTATGCATACCATTGACGACACGCTCGAAAAACATTTGAACCGTATCGAATCGGTGGAGTCGCGTGAAGCCCATGATGAGGAAGTCACGAAGGCACTGCTGGGGGATAATACGGTGGATGCTGCAACCGCAGCGAAAACCAAGTGGGACAAGGCGGGGACGGACGCTACCGCCGCCGCAAGCAAGGCCGACGGCAACACTCAAGCATTGACGGCGCTCGGAGTCGAAACCGCGGAAAAGGCAGCAAAGTTCGCCCACGAAATCACCTCAAACTGCAATGTCGTGCTACACGGCATCCCTAACGACGCATCATATTCGGTGTCCGACCTCATCAATGCGTATATCAAGGACAATCCGTTTAACGGCGTGTACTTCCCCGCCGGAACCTACCATTTGGACAAAACTATCGACATTCCAAAGAACACGACGAATCCGTTCACCTTCTACGCCGAACCTAACGCAAAGTTCGTCGCAACGGCAAATATGACGGACATGTTCGATTTTGGCGCATACTCCGAAAACGGCGAAAAGACATATGGGGCGACAATCACCGGCGGTGTATACGACTGTGCGGGCCTGTGTGATAATTGCTGGAGTTTTGAACAGGACGTATACGGCGTAAGCGTTTCGAACATGACGGTCAAAGGTGCCAAGGTAGCGTCATTCTATGCGAAAAGAACTCAAGCACTGGACATGCTTTTCACCAATATCAGGGTTAACATGCTCAAGGAAAGCGCGGATTCCCAGTACGGGTTTTATCTCAACGGCACGGATTGTCAGTTCGTCAACGTCTACACGACATATTGCCATACGCATTTTAAATGCAACGGTGGCGGAATGATGTTCGACACGGTTCACTCATTCAACAATCCATCATTCCAGAACGCCGTCTGCTATGATCTTGCAAATGGGGTATATTTTGGTAACAACATCTACATTGATACTATAGCCATCGGTGTGCAATCCAAATACATTGACGCTTATTTTACCAACGTATATCACTACACGTATGCAGAACTTGATACGGATACCGTGACATTCAAGGTATCGTACAACGCCCGACTGCGCTGTGACGGATTATATGCGAGATTCCTTGAAGACAGTCATGCGGCAACACCGCTCGTAGGGGTGAAAAACGATCAGTATACATTTAATTTTGAGAACGTGAAATTCTCCAACGTAGACACATACGGTGATAACTGTCTTATGCCTGTAATGCCAAACTATGGAAAAAGCTCGTATCATTCAAGTTTATTTTACGGCGTAACGGACAGTTCAAACGGTTATATCCCCATTGGAGTATTGTACGAAGAAATGGCTCAGAGCATTTCTGTTTTTACATCCAAATCACTAGAGCCATACGGTGAAGTCACTATCGAAATAGACAATCTATCAGATATTTACGTTAGAAACATGACATTTAGCAAAGATTCGATAAAATATTCAACGAATGGGTTCCTATATGACGTAAACAGCTGTTTCCCAATATGCGTTTCCGATTCAAAAACCAATAAGCTCGGATTGCGCTATAGGGTCATATACTTAAAAAACACCACCACTCTTAGCAATAGCTATAAGAACATAACAATTCATCCCAATAGGACAGGAATCACGCTCTTTCCGAAAGGTGGTGTCGCCACTGAACCCCCAATCATAGCGGCACAGACAACGCCGGTTATTAAAACCATAGCGGCCCAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
d89cb75bbe7feff5a8a73cd9ccf8bea07390da41a77421c5663815cc6ac436db
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6181
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50