Protein

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Genbank accession
XAO35746.1 [GenBank]
Protein name
tail spike protein
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,90
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MSTITQFPSGNTQYRIEFDYLARTFVVVTLVNSSNPTLNRVLEVGRDYRFLNPTMIEMLADQSGFDIVRIHRQTGTDLVVDFRNGSVLTASDLTNSELQAIHIAEEGRDQTVDLAKEYADAAGSSAGNAKDSEDEARRIAESIKASGQIGYITRRSFEKGFNVITWNEVLLWEEDGEYYRWDGTLPKNVPAGSTPEASGGVGIGAWVSVGDAALRGQISEPDGAEEYPELQMARWRDDGDVRGWGAKGDGVTYDTAAFVAAANAVGEGGVIRARGNYLLKKITIPPVTIQGDGQGKTILTFDNASGQDDGVVFTAPTKQDIEFGCRHLSIRTVGGHGRYAINCPRGAGLNGLRPKPTFKHLSFYSEKTNAEFEGFSQVWSWQFTFLLGDAWNLTINRIDAVGCYQAKIDYRTQFLDGFIRSTPAEGILSMRLENTTCHNIANFFEIQQKTYFCMTNIDCARSLRGVYDAPDRVFETNRSAYGESIWTNVIINSQLEPVRLDNRFYLVANGVAIHRATNAFDHGQEWVGLNLTRARACSFHGLEIGTARGYSGRKVGVRLDAGDANNFTNVAFGMLDVGFQVGDNASSYGANQGTNVVNVSVIADQDVLFDLQSCRNFHCFGYGKSPAYSLNTFLTVGSDAGNTYNFSGIEGYGQYTDNSHYWYNSAAGANEKRWRFDTRSGFILATQTDTGAVGNNGLILNRSGLAITKAELRADPSSGYVLLTGSSIQAANYIKPTVDNAFSNGNASFRWSTIYAGTGSINTSDARLKTDVRSIADAERAVALKIKGLIRRYKFNDSVENKGEDSARYHFGVMAQAVSDAFREEGLDPDQYGMFCYDKWDTQYAPEVAKRTITVVNHDTGETWEEEEEYETGGQVVVLEAGDRYGIRYEELLCFIIAAI
Physico‐chemical
properties
protein length:900 AA
molecular weight: 99086,70030 Da
isoelectric point:5,06642
aromaticity:0,10889
hydropathy:-0,34633

Domains

Domains [InterPro]
DC_0369
STR
1–852
DC_0369
IPR005604
ATT
10–113
IPR005604 G3DSA:2.10.10.80 IPR012334 IPR036388
IPR040775
RBD
154–211
IPR040775 IPR011050 IPR030392
cd10144
CHP
764–900
cd10144
IPR030392
CHP
764–827
IPR030392
XAO35746.1
1 900
Architecture
ATT
STR
ATT
STR
RBD
ATT 1-113 | STR 114-149 | ATT 150-220 | STR 221-852 | RBD 853-900
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XAO35746.1
1 900
Domain Start End Length (AA) Confidence
N-terminal 1 254 254 0,9937
Central domain 255 639 386 0,9899
C-terminal 640 900 260 0,9191
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-254
Central
255-639
C-terminal
640-900

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage PSK1
[NCBI] 		3138287 Viruses >
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XAO35746.1 [NCBI]
Genbank nucleotide accession
PP541512.1 [NCBI]
CDS location
range 10018 -> 12720
strand +
CDS
ATGTCCACGATTACACAATTCCCTTCAGGAAACACTCAGTACAGGATAGAGTTCGACTACCTAGCCAGAACGTTTGTTGTTGTTACGCTGGTGAATAGCTCTAACCCTACCCTGAACCGTGTACTGGAAGTTGGTCGAGATTACCGATTCCTTAATCCAACGATGATTGAGATGTTGGCTGACCAATCAGGTTTCGACATCGTTCGTATTCACCGTCAGACTGGAACTGACTTAGTGGTAGACTTCAGGAATGGCTCAGTGTTGACAGCTAGTGACCTGACCAATTCAGAGCTTCAGGCTATCCATATTGCAGAAGAAGGTCGAGACCAAACTGTTGACTTAGCGAAGGAATATGCCGATGCTGCTGGTAGCTCTGCTGGCAACGCTAAGGATAGCGAGGACGAAGCACGACGAATCGCTGAGAGTATCAAGGCATCTGGTCAAATTGGCTATATTACCCGTCGCTCCTTCGAGAAAGGCTTCAACGTTATAACATGGAACGAGGTGCTGCTATGGGAAGAGGATGGTGAGTACTACCGCTGGGATGGTACGCTTCCAAAGAACGTTCCGGCCGGTTCAACACCTGAGGCATCTGGTGGTGTTGGTATTGGTGCATGGGTTAGTGTTGGTGATGCCGCTCTTCGGGGTCAGATATCTGAACCGGATGGTGCAGAGGAGTACCCAGAACTGCAAATGGCGCGATGGCGTGATGATGGTGATGTGCGTGGTTGGGGTGCTAAGGGAGACGGTGTTACGTATGATACTGCGGCTTTTGTTGCAGCCGCAAATGCCGTGGGTGAAGGTGGTGTGATCCGCGCGAGAGGAAATTACCTTCTCAAGAAGATTACAATCCCGCCAGTAACCATACAGGGAGACGGGCAGGGAAAAACCATCCTGACATTTGATAACGCATCTGGTCAGGATGATGGTGTGGTTTTCACTGCACCAACGAAACAGGATATTGAATTTGGCTGCCGCCACCTTTCTATAAGAACAGTAGGAGGTCACGGGCGGTATGCAATCAACTGCCCACGAGGTGCAGGGTTAAACGGATTGAGACCAAAGCCTACCTTTAAGCATTTATCTTTTTATTCAGAAAAGACGAACGCCGAGTTCGAAGGATTTTCTCAGGTTTGGTCATGGCAGTTTACGTTTCTTCTGGGTGACGCTTGGAACTTGACTATCAATCGTATTGATGCGGTTGGTTGTTATCAGGCTAAGATCGATTATCGAACGCAGTTCCTGGACGGCTTCATCAGAAGCACCCCGGCGGAAGGTATTCTGTCGATGCGATTAGAAAATACGACGTGTCACAATATCGCGAACTTTTTCGAGATTCAGCAGAAGACCTATTTCTGTATGACAAACATCGACTGCGCGCGATCCCTAAGGGGTGTATACGACGCTCCTGATCGTGTCTTCGAGACAAACCGCTCAGCGTATGGTGAGTCCATCTGGACCAATGTTATCATCAACTCTCAGCTCGAACCTGTCAGGCTTGATAATCGCTTCTATCTCGTGGCGAATGGAGTCGCTATACATAGAGCAACCAACGCATTCGATCACGGTCAGGAGTGGGTGGGGCTAAATCTCACTCGCGCTCGCGCGTGCTCATTTCATGGGTTGGAGATTGGGACCGCGCGAGGATATTCCGGTCGCAAGGTTGGCGTCCGTCTCGATGCAGGCGATGCAAACAACTTCACGAACGTTGCGTTCGGCATGTTAGATGTAGGGTTTCAGGTCGGGGATAATGCGTCTAGTTACGGTGCTAATCAGGGTACGAATGTCGTCAACGTCTCGGTTATTGCCGATCAAGATGTTTTGTTCGATCTCCAAAGTTGTCGGAACTTTCATTGCTTTGGGTACGGGAAGTCCCCAGCATACTCATTGAACACTTTCCTGACAGTGGGGAGCGATGCTGGCAATACGTACAATTTCAGCGGCATTGAGGGCTATGGTCAATATACCGACAACTCTCACTACTGGTATAACTCTGCTGCTGGTGCCAATGAGAAACGTTGGAGATTCGATACTCGTTCAGGATTCATTTTAGCAACTCAAACAGACACGGGTGCGGTGGGGAATAATGGCCTAATTCTGAATCGCTCTGGGTTGGCTATAACGAAGGCTGAGTTAAGAGCCGATCCGTCCAGCGGCTATGTTCTCCTGACAGGCTCATCGATACAGGCAGCAAACTACATCAAGCCAACTGTTGATAACGCATTCAGCAACGGGAACGCGTCTTTCCGCTGGTCAACGATTTATGCTGGCACCGGATCGATTAATACCTCCGATGCTCGCCTGAAGACCGACGTAAGAAGCATCGCTGACGCGGAGCGTGCAGTAGCGCTGAAAATCAAAGGGCTTATCAGGCGCTACAAGTTCAATGATTCCGTGGAGAATAAGGGTGAAGACTCAGCAAGGTATCACTTCGGTGTAATGGCTCAGGCTGTTTCCGACGCTTTTAGGGAAGAGGGGTTAGACCCCGATCAGTACGGTATGTTCTGTTACGACAAATGGGACACCCAGTACGCTCCAGAAGTTGCGAAGCGAACGATCACCGTAGTGAATCACGATACAGGTGAAACGTGGGAAGAGGAAGAAGAATACGAGACGGGAGGTCAGGTTGTCGTGCTTGAAGCCGGTGATCGATACGGCATTCGTTATGAAGAGCTTCTCTGCTTCATCATCGCAGCGATTTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
43eae0647dc560390a7fddfc68f9e6758f6542d916401187c4813354afdf92d2
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7327
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation and characterization of bacteriophages against Uropathogenic Escherichia coli Batool,K., Alvi,I.A. and Rehman,S.U. 2021-01-03 — GenBank