Protein

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Genbank accession
YP_009966407.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MARYTNTPKTSLKGINAELVKIQDAFEDVLDRKGDGANFLDTDLDMNSQRILNLPEPVYSQEPVRLGDVKPFIDDTKTARDAAVEAAGGAQESEEQAAVSAGQSASSAEQSATSAANSAAKAKDLTEITSALLISQGLSGEYGFFEKGFTYNESGDVGIDSDGSIWTYNGALPFEVEKDTVPSEPVYSKYNLSKNYTRRVKNIDELKALEVDESMVGIRIKTNEYHAGTGYGGGEWEIVTGEAADDIDVIQSEENASIQFKIISVSKLDLSQLGVRYGGVEYERSAIREFLTKGNVKNYVISGELLLKQGLGQPAGTRVEFEKGGKVRITSPFYAVWAFEGGDELTELVDPVIDGDNFLGCNGIGVGGSGLGTVTNIKITRPVLLRCKRQPDHTDIYNGGGRGIMVESNVTDVQIDNPQAIDCTAAYAYQCTVASPSDRVTVVNPIARNCMHYAEFFDLADFSNDPDSGEMGGINILGGYAYNCGKGEEDYYSGDGVFDAAQDTGVIIGERARHVTWRGFKIHNENSYGKVGSAWRGTGFHIDIEGTFIGSAVAAYDGTIDNTLLPIGGGNTPPSGASINSRGVSPKIRVIGSVDYAYRCLTPSGITLGHKGHKVQIEMSSNPSVGLIDVPTARSDAYAVFYNYNTGGSISGAFNQIVNSGNQLSSDGSDYEYKDKLTVNGLLRVVATSDFDGILRSNGEFISASNATFDGSKTVRVENLPSTTGIQNRLIKSQTLPAGFSYVLVKD
Physico‐chemical
properties
protein length:747 AA
molecular weight: 80058,75460 Da
isoelectric point:4,72903
aromaticity:0,08434
hydropathy:-0,31165

Domains

Domains [InterPro]
DC_2003
STR
1–736
DC_2003
YP_009966407.1
1 747
Architecture
STR
STR 1-736 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009966407.1
1 747
Domain Start End Length (AA) Confidence
N-terminal 1 284 284 0,9943
Central domain 285 657 374 0,9836
C-terminal 658 747 89 0,6513
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-284
Central
285-657
C-terminal
658-747

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudoalteromonas phage HP1
[NCBI] 		1357706 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Pseudoalteromonas sp.
[NCBI] 		53249 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Alteromonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009966407.1 [NCBI]
Genbank nucleotide accession
NC_048630.1 [NCBI]
CDS location
range 24701 -> 26944
strand -
CDS
ATGGCACGATATACTAATACACCGAAGACTTCGCTTAAAGGTATTAACGCAGAGCTTGTGAAGATACAGGACGCGTTTGAAGACGTACTAGACCGCAAGGGTGATGGTGCTAACTTCTTGGATACTGACTTAGATATGAACAGTCAGCGTATCCTGAACCTCCCTGAACCTGTTTACTCACAGGAGCCTGTACGTCTAGGTGACGTTAAACCTTTTATTGATGATACTAAGACTGCACGGGATGCTGCTGTAGAAGCGGCAGGTGGAGCGCAGGAGTCAGAGGAGCAAGCGGCGGTGTCCGCAGGGCAATCTGCTAGTTCAGCAGAGCAGTCGGCTACCAGTGCAGCTAACAGTGCAGCTAAGGCTAAAGACCTAACTGAGATTACCAGTGCGTTGCTTATATCTCAAGGGCTTAGCGGAGAGTACGGCTTCTTTGAAAAAGGCTTTACATATAACGAGTCTGGCGATGTTGGTATCGATTCGGATGGCAGCATCTGGACTTATAACGGAGCACTGCCGTTTGAGGTTGAAAAGGATACGGTTCCTAGCGAACCTGTCTATAGTAAGTACAACCTCTCTAAAAACTACACACGCCGAGTAAAAAACATTGACGAGTTAAAAGCGCTAGAAGTTGACGAGTCAATGGTTGGGATCCGTATTAAAACTAACGAGTATCATGCTGGTACTGGTTATGGCGGTGGTGAGTGGGAAATTGTAACTGGTGAGGCTGCGGACGATATTGATGTAATTCAAAGCGAGGAAAATGCAAGTATTCAGTTTAAAATAATAAGTGTTAGCAAGCTGGATTTATCTCAACTTGGCGTTCGTTATGGAGGCGTAGAGTACGAGAGAAGCGCCATCAGGGAGTTCCTAACCAAAGGTAATGTAAAAAATTACGTCATAAGCGGAGAGCTTCTTCTTAAACAAGGCTTAGGCCAACCAGCAGGGACAAGAGTAGAGTTCGAAAAAGGCGGCAAGGTTAGAATAACCTCACCTTTTTATGCAGTATGGGCTTTTGAGGGAGGTGATGAATTAACAGAACTTGTAGACCCTGTTATTGACGGTGATAACTTCTTAGGTTGCAATGGTATCGGTGTTGGCGGGTCTGGGTTGGGGACTGTAACGAATATAAAAATAACTAGACCTGTACTTCTAAGATGCAAAAGACAACCTGACCACACGGACATATATAATGGCGGTGGGCGGGGGATAATGGTTGAATCTAACGTCACAGACGTACAGATTGACAACCCTCAAGCTATCGATTGTACCGCAGCTTATGCGTATCAGTGTACTGTAGCGAGTCCCTCAGACCGAGTTACCGTAGTTAACCCTATAGCAAGGAATTGTATGCACTACGCTGAGTTTTTTGACTTAGCAGATTTTTCAAATGACCCCGATTCTGGGGAAATGGGCGGCATAAACATACTAGGCGGGTACGCTTACAACTGCGGTAAAGGGGAAGAAGATTACTACAGCGGAGACGGAGTTTTTGATGCCGCTCAAGATACTGGTGTTATTATAGGCGAGCGAGCAAGACATGTTACTTGGCGAGGGTTCAAAATACACAATGAAAACTCTTACGGAAAAGTTGGTTCAGCATGGAGAGGGACGGGTTTCCATATTGATATCGAAGGTACATTTATAGGTTCTGCTGTTGCTGCTTACGATGGAACTATTGATAACACTCTATTACCTATCGGTGGTGGAAACACACCACCAAGTGGTGCTAGCATTAACAGTAGGGGTGTAAGTCCGAAAATACGAGTAATTGGTTCAGTAGACTACGCATATAGATGTCTTACCCCGAGCGGCATAACATTAGGACACAAAGGTCACAAAGTTCAGATAGAAATGTCAAGCAACCCGTCTGTAGGTTTAATTGATGTTCCAACCGCAAGATCTGACGCTTACGCAGTTTTCTATAATTACAATACTGGCGGCTCTATAAGCGGCGCTTTTAACCAGATAGTAAACAGTGGAAATCAACTATCATCTGATGGTTCTGATTATGAGTACAAAGATAAATTAACTGTAAACGGATTGCTCAGAGTTGTTGCCACCTCAGACTTTGATGGAATATTAAGAAGTAATGGAGAGTTTATATCTGCATCAAATGCTACTTTTGATGGGAGCAAAACAGTTAGAGTAGAAAACCTACCAAGCACTACGGGTATACAAAATAGGCTTATAAAGTCTCAAACCCTACCGGCAGGGTTCAGTTATGTATTAGTTAAAGACTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
7fe14ab9947480623628ba29e828396468b3cf24a8620fc06463d4ece2aa1bc8
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6402
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Pseudoalteromonas phage genomics Duhaime,M.B. and Sullivan,M.B. 2010-07-08 — GenBank