Protein

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Genbank accession
XCI77916.1 [GenBank]
Protein name
tail spike protein with colonic acid degradation activity
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MASVITIAGEKLFATKAQANEQLDIDTFIFANVPAQDATAPINREEGLPTDHVVHQQIVQQVGRINDNVVVYSTVLDSITGPFEFNWVGLYSSINNTLVAINHIPTTPKTATAAGVAGNTLNRNFGIEYSGIADLTGITVAPETWQLDFTARLQGMDKLTQKLAKDLNGTDSFIDDGFKVVSRSTANTFSVLPGVGYVNGLRVEILEEQILIADSYPKNVYINAYFDGDASSVWEPKNNVSITNEELTDYIDGNGKNHYLVKLANIIAADQVEDMRVDFNLVKNSTERNFATVDEAKNDKLLKVGQKITIDERDGAKFKVVDSAGLFIDEYAIISTCKNSNALKIEIEGNSVTLISLGAKDDGVEGDGLGSPATGFDNGPVLQAAQRLREENKCNVKITRKDKGVYRYRQTIIAEKDSFSIIGEQSDNIFESGAKLYFDPENGEKVGFKSLQPSSIFSYVFFDSINRFSGIEHVSASHVDINNKQDVDIIFDRCTFRNFENAVSVEGRGFLAYDCSFSVGRNALKIDWPDGFIEGELPEKSKYMGMRGYTQRNCEYHAMNGHAIVNQGGNAINANNINIIGANADTSIGLLKGSARDSTFESNNLTQGEMEVFDIGSGKLENVSVSGGLLMGMNAESGGRRGLRGVLLALAGSTIRDVSFSGVNMSEIDRNVFYCAGDVDGLTINGGVVSKFMNDNISSLSYRNYINLINATSVKDVKVNNVLLKNKDYENNPNELISVKLEHLSNVHVSSVIYDGSVIDLLPENLTGSAYNLKKLTYTGDGEAAKIIYTGNRVIETVIVSERNGSSRPNATYIATEFGASSDPIEIQGGSNVMARDHFNESGAVYQAVIYF
Physico‐chemical
properties
protein length:852 AA
molecular weight: 92856,65400 Da
isoelectric point:4,84367
aromaticity:0,08333
hydropathy:-0,22383

Domains

Domains [InterPro]
DC_0787
STR
1–825
DC_0787
IPR022225
ATT
3–156
IPR022225 IPR011050
XCI77916.1
1 852
Architecture
ATT
STR
ATT 1-156 | STR 157-825 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
XCI77916.1
1 852
Domain Start End Length (AA) Confidence
N-terminal 1 379 379 0,9945
Central domain 380 767 389 0,9863
C-terminal 768 852 84 0,9658
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-379
Central
380-767
C-terminal
768-852

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudoalteromonas phage vB_Psp_PY3
[NCBI] 		3155224 No lineage information
Host Pseudoalteromonas sp.
[NCBI] 		53249 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Alteromonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
XCI77916.1 [NCBI]
Genbank nucleotide accession
PP793001.1 [NCBI]
CDS location
range 27680 -> 30238
strand +
CDS
ATGGCTTCAGTAATTACAATCGCAGGTGAAAAGCTTTTTGCTACTAAAGCGCAAGCTAATGAGCAACTAGACATAGATACGTTTATATTTGCAAACGTACCCGCGCAAGACGCAACAGCCCCAATAAACCGCGAAGAGGGCCTACCAACCGATCACGTAGTGCATCAACAAATTGTGCAGCAAGTTGGCCGCATAAACGACAACGTAGTTGTTTACTCAACAGTACTCGACAGCATTACAGGCCCGTTTGAGTTTAACTGGGTGGGTTTATATTCATCAATTAATAATACATTGGTAGCAATTAACCACATACCAACCACACCAAAAACAGCTACCGCCGCAGGTGTTGCAGGTAATACCCTAAATCGTAACTTTGGTATTGAGTACTCAGGCATTGCCGACCTAACTGGTATTACTGTAGCACCAGAGACATGGCAACTAGACTTTACCGCCCGCTTGCAAGGCATGGACAAACTAACCCAAAAGTTAGCTAAAGATTTAAATGGCACCGACTCATTTATTGATGATGGTTTTAAAGTGGTTTCAAGATCTACAGCAAATACTTTTAGCGTTTTGCCAGGCGTTGGTTATGTTAACGGCCTGCGAGTAGAGATTTTAGAAGAGCAGATTTTAATTGCAGATAGCTACCCTAAAAATGTTTATATAAATGCCTATTTTGACGGTGATGCATCTAGCGTGTGGGAACCAAAAAACAATGTAAGCATCACGAATGAAGAGCTAACAGATTATATCGACGGAAACGGTAAAAACCACTACCTAGTAAAATTGGCTAACATAATTGCCGCTGATCAAGTTGAGGACATGCGCGTTGATTTTAACCTAGTGAAAAACAGCACTGAGAGAAACTTTGCAACAGTCGATGAAGCCAAAAACGATAAATTGTTAAAAGTAGGGCAAAAAATCACGATTGATGAGCGTGACGGCGCTAAGTTTAAAGTTGTTGATAGTGCCGGATTGTTTATTGATGAATATGCAATCATATCAACATGTAAAAATTCGAATGCGCTTAAGATAGAAATAGAAGGTAACAGCGTAACATTGATTTCATTGGGCGCTAAAGATGATGGAGTAGAAGGCGATGGGCTGGGTAGTCCAGCAACAGGGTTTGACAATGGCCCAGTACTACAAGCAGCACAGAGATTAAGAGAAGAAAATAAATGCAATGTAAAAATAACCAGAAAAGATAAAGGCGTATATCGCTACAGACAAACAATTATAGCTGAAAAAGACAGTTTTTCGATTATAGGTGAGCAGTCTGACAACATATTTGAGAGTGGAGCTAAGCTTTACTTTGACCCCGAAAACGGTGAAAAGGTTGGTTTTAAAAGTCTGCAGCCGAGTTCAATTTTTTCGTATGTTTTTTTTGATAGTATCAATAGGTTTTCGGGAATTGAACATGTTAGTGCTAGCCACGTTGATATTAATAACAAACAGGATGTTGATATTATTTTTGATCGCTGCACTTTTAGAAATTTCGAAAATGCAGTCAGTGTTGAAGGGAGGGGGTTCCTGGCATACGATTGCTCATTTTCAGTGGGTAGAAATGCATTGAAAATTGATTGGCCTGATGGTTTTATTGAGGGCGAATTACCAGAAAAATCAAAATACATGGGGATGCGCGGTTATACACAAAGGAATTGCGAATATCACGCAATGAATGGACACGCTATTGTTAATCAGGGAGGCAATGCCATAAATGCTAATAATATCAATATAATTGGTGCTAATGCAGATACGAGTATAGGATTATTAAAAGGTAGCGCTAGAGATTCTACATTTGAAAGTAATAACTTGACACAAGGAGAGATGGAGGTTTTCGATATTGGCTCAGGTAAGCTAGAAAATGTCAGTGTTTCAGGTGGTTTATTAATGGGAATGAATGCTGAATCAGGGGGAAGAAGGGGCTTAAGGGGCGTATTGTTAGCGCTTGCAGGTTCAACAATTAGAGATGTTAGTTTTAGTGGTGTAAATATGTCTGAAATTGACAGAAATGTATTTTATTGCGCAGGTGATGTTGATGGTTTAACTATTAATGGCGGCGTAGTAAGTAAGTTTATGAACGATAACATAAGCTCATTGAGCTACCGAAATTACATTAATTTAATTAATGCGACTTCAGTGAAAGACGTAAAAGTAAACAATGTTTTGCTAAAAAACAAAGACTATGAAAACAACCCTAATGAACTCATATCAGTAAAGTTGGAGCACTTGTCAAACGTGCATGTGTCCAGCGTTATTTATGATGGTTCAGTAATTGATTTATTGCCAGAAAACCTTACCGGGTCAGCATATAACTTAAAAAAGTTAACTTACACAGGAGACGGTGAAGCCGCAAAAATTATCTATACGGGAAACAGAGTAATAGAAACCGTGATAGTGTCAGAGCGAAATGGCAGCAGCAGACCCAATGCAACATACATTGCGACAGAGTTTGGAGCATCGTCCGATCCGATAGAAATACAAGGGGGTAGTAATGTTATGGCGCGTGACCACTTCAATGAGTCAGGAGCGGTTTATCAAGCTGTTATATATTTTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
a3cc7f517fe93b931780c11a69f8514d43ecf70b6f85781790a38b1aec64dc1a
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7258
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Characterization of bacteriophages from antarctic seawater Rojas,N., Araneda,D., Bastias,R., Olivares,J., Plaza,N., Katharios,P., Garcia,K., Alcaman,M.E. and Higuera,G. 2009-01 — GenBank