Protein

View in Explore
Genbank accession
AYP29778.1 [GenBank]
Protein name
antireceptor
RBP type
TF
Evidence GenBank
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,94
Protein sequence
MTEHKIILSTTEPNSNIGIIKLRHADVNSQVIVAQIVENGQPKNFEGLQPYFCLMAQEVTGQGVSEESVVSFDAKNGTLKYVASDNALQMVGHNEAYFSFRKQEDGRWIEQFSTRTFHYIVEKSIYSQPFKDSNYWWTFKELNRIFNQYIEDGKTSWEEFVKSNREIIESIDPGGQVLSELIRSRKPEDAASAYPDLPTRLDKQIGKNTDFRSFESDKSFMTRVYNESAERGVNVKWFGAKGDGVTDDTVAIQSAIDTGFSVFIPPGKYNVKELKGFSSGQIIQGISKVESWGGKNTQNITLLNGIGSADNYVIKNNVWGDGILPNAITVKNLSIEGSKKTNGILVGNSSTIEGVKIANCINGLSNIKVSNVMNCQINGCTNGVMNATDSKITNNFFYFNEVGINFDNSNDNSIVNNKIEWNGIGISLTKATYNLISNNIIDRNTTYGIYTSNVVSTTISGNQFERNLTNHLYLHGSLFNISTNSFFRKNSEDNQSGIVAPDVAIFTKSIEKSSITSNLVYGKMFNKTGTDYTSNLSIFANTIDGINPDNITVSIPETTAFHGKDTKIIIPLPNYFDGALNNPYNVEILSQKISFISQKGNFYSNGEIIKSIYMSTSGIELTIFNGYSDDLKITGTINVRCTYPNLY
Physico‐chemical
properties
protein length:647 AA
molecular weight: 71901,56480 Da
isoelectric point:5,60679
aromaticity:0,10355
hydropathy:-0,34760

Domains

Domains [InterPro]
G3DSA:2.60.40.3350
ATT
1–125
G3DSA:2.60.40.3350 G3DSA:6.10.250.1350 IPR011050 DC_1144
G3DSA:2.60.40.3350
ATT
1–126
G3DSA:2.60.40.3350 G3DSA:6.10.250.1350 IPR012334
G3DSA:2.60.40.3350:FF:000001
Unmapped
1–126
G3DSA:2.60.40.3350:FF:000001 IPR012334
IPR018913
ATT
3–148
IPR018913 IPR024535 IPR006626 IPR039448
IPR006626
Unmapped
387–408
IPR006626 IPR006626 IPR006626
IPR022441
Unmapped
403–445
IPR022441
IPR022441
Unmapped
425–467
IPR022441
AYP29778.1
1 647
Architecture
ATT
STR
RBD
ATT 1-192 | STR 229-560 | RBD 563-647
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AYP29778.1
1 647
Domain Start End Length (AA) Confidence
N-terminal 1 248 248 0,9955
Central domain 249 554 307 0,9924
C-terminal 555 647 92 0,9829
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-248
Central
249-554
C-terminal
555-647

Taxonomy

  Name Taxonomy ID Lineage
Phage Streptococcus phage SW22
[NCBI] 		2419643 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Streptococcus thermophilus
[NCBI] 		1308 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Lactobacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AYP29778.1 [NCBI]
Genbank nucleotide accession
MH892369 [NCBI]
CDS location
range 14703 -> 16646
strand +
CDS
ATGACAGAACATAAGATAATTTTAAGTACCACAGAACCTAATAGCAATATTGGCATTATTAAGCTAAGACATGCGGATGTCAATAGTCAAGTAATTGTTGCTCAAATCGTAGAGAACGGTCAGCCCAAGAACTTTGAAGGCTTACAGCCTTACTTTTGTTTAATGGCACAAGAAGTCACAGGTCAAGGAGTGTCAGAAGAAAGTGTTGTCTCCTTTGATGCAAAAAATGGAACACTGAAATATGTTGCCAGTGATAATGCTTTGCAAATGGTTGGACATAATGAAGCTTATTTTAGCTTTAGAAAACAAGAAGACGGGCGGTGGATTGAGCAATTCTCTACTCGGACATTTCACTATATTGTTGAGAAATCTATTTACTCACAACCCTTTAAAGACTCGAATTACTGGTGGACATTCAAAGAGTTAAATCGAATCTTCAACCAATATATTGAAGATGGTAAAACTAGCTGGGAAGAATTTGTGAAATCCAACCGTGAAATTATTGAATCCATTGATCCAGGCGGCCAGGTTCTTAGCGAGTTGATAAGGTCAAGGAAACCGGAAGATGCTGCTTCGGCATATCCAGACCTGCCGACTAGGCTAGATAAACAAATCGGGAAAAATACTGATTTTAGGTCATTCGAATCGGATAAATCGTTCATGACTAGAGTTTATAACGAATCTGCTGAACGAGGAGTTAATGTCAAATGGTTTGGAGCTAAAGGAGACGGAGTAACTGATGATACTGTTGCGATACAAAGCGCTATTGATACAGGTTTTTCAGTTTTCATACCGCCCGGTAAGTATAATGTAAAAGAATTGAAAGGTTTTTCATCAGGACAAATCATACAAGGAATTAGTAAGGTTGAATCTTGGGGAGGAAAAAACACACAAAATATAACGCTACTTAATGGAATAGGTTCTGCAGACAACTATGTGATAAAGAATAACGTTTGGGGAGATGGTATTCTGCCCAACGCTATTACCGTAAAGAATTTATCCATAGAAGGTAGTAAGAAAACAAATGGAATACTTGTCGGAAACTCTAGTACTATTGAGGGAGTGAAAATCGCAAATTGTATTAATGGGCTATCTAACATCAAAGTGTCAAATGTTATGAATTGTCAAATTAACGGTTGTACTAACGGAGTAATGAATGCCACGGATTCAAAGATAACTAATAACTTTTTCTATTTTAATGAAGTCGGCATAAATTTTGATAATTCCAATGATAACAGTATTGTGAATAATAAAATAGAGTGGAATGGAATAGGAATATCCTTAACGAAAGCGACTTACAACTTAATTAGTAATAACATTATTGATAGAAACACTACTTATGGAATATATACGTCTAATGTGGTTAGTACAACTATTTCAGGTAATCAGTTTGAAAGAAATTTAACAAATCATCTTTACTTACATGGTTCTCTATTTAATATTTCTACAAATTCTTTTTTTAGAAAAAATTCGGAAGATAACCAATCAGGAATAGTCGCTCCTGATGTAGCTATTTTCACTAAGTCTATAGAAAAATCTTCAATAACAAGTAATCTTGTTTATGGTAAAATGTTCAACAAGACAGGTACAGACTATACCTCTAATCTTAGCATCTTTGCCAATACCATAGATGGAATAAATCCTGATAATATAACTGTATCCATTCCAGAAACAACTGCCTTTCATGGTAAAGATACAAAGATAATTATTCCTCTTCCAAATTATTTTGATGGTGCATTAAACAATCCATATAATGTAGAAATCCTCTCACAAAAAATATCGTTCATCTCACAAAAAGGGAACTTTTACTCAAACGGAGAAATCATAAAGAGCATTTATATGTCCACAAGTGGTATTGAGTTAACAATTTTCAACGGATATAGCGATGATTTGAAAATAACAGGGACAATAAATGTAAGATGTACATATCCAAATTTATATTAG

Genome Context

Genome Context

Tertiary structure

PDB ID
a23c01ede7254f0d5a1b9ddd16279c5ee89c65527e07987cd2cb7e942f510d41
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7709
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Biodiversity of Streptococcus thermophilus Phages in Global Dairy Fermentations Lavelle,K., Martinez,I., Neve,H., Lugli,G., Franz,C., Ventura,M., Bello,F., Sinderen,D. and Mahony,J. 2018 — GenBank