Protein

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Genbank accession
APC46546.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence RBPdetect
Probability 0,87
Protein sequence
MSLLSPILQSVLSPISESISGAVSRYFTTFDAVAQSYILLSSDVGIPSSTDYEIEFDVIPDGTTQVVIGKKEGVNPRVRILSNGDIQWEANNSGGTIVRTPSNLEVGKLNRVRLVKSGLSTSIIVNGVQAGTQETVGIDAANFNQLGRAFNFPPSGGRVSDLKAWSGGDRDTGSLIFDMPINQNYTPTNNTVIDLSGNGNNGTFVNVADGDSTLYTQNSDGDWVGENLVENGGFSSTSGWDDTSQGTGTAQITAGRAIVTGTTFANRGQLSQSIDTTAGQMYRVTFTCLQDQTAFIVVSESFGGSLEVFNIPSEGAHSFTFTATTSSTDVVLRSQGGESIFDDVTVEPFLEVAY
Physico‐chemical
properties
protein length:354 AA
molecular weight: 37460,67480 Da
isoelectric point:4,21412
aromaticity:0,08192
hydropathy:-0,12825

Domains

Domains [InterPro]
IPR013320
STR
30–166
IPR013320 IPR008979
IPR013320
STR
34–166
IPR013320
PF13385
LEC
55–166
PF13385
APC46546.1
1 354
Architecture
STR
STR
STR 30-166 | STR 224-347 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
APC46546.1
1 354
Domain Start End Length (AA) Confidence
N-terminal 1 26 26 0,9738
Central domain 27 225 200 0,2280
C-terminal 226 354 128 0,8811
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-26
Central
27-225
C-terminal
226-354

Taxonomy

  Name Taxonomy ID Lineage
Phage Alteromonas phage PB15
[NCBI] 		1913113 No lineage information
Host Alteromonas gracilis
[NCBI] 		1479524 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Alteromonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
APC46546.1 [NCBI]
Genbank nucleotide accession
KX982260 [NCBI]
CDS location
range 14462 -> 15526
strand -
CDS
ATGAGTTTATTGTCTCCGATATTGCAGTCTGTTTTATCCCCTATATCCGAATCGATTAGCGGTGCGGTATCACGCTATTTTACTACATTTGACGCTGTGGCGCAGAGTTATATTCTACTATCTAGTGACGTCGGGATACCCTCATCAACAGATTACGAGATTGAATTCGACGTTATCCCTGATGGTACGACGCAAGTGGTTATAGGTAAAAAAGAGGGTGTCAATCCAAGGGTTAGAATTTTGTCAAATGGGGATATCCAGTGGGAAGCTAATAACTCAGGTGGTACCATCGTTCGAACTCCTTCAAACTTGGAGGTGGGAAAGTTAAATCGCGTAAGGCTTGTGAAATCAGGCCTTTCGACGAGTATTATAGTAAACGGTGTCCAAGCGGGAACTCAAGAGACAGTTGGTATAGACGCAGCTAACTTCAACCAGCTAGGAAGGGCTTTCAATTTCCCTCCTTCAGGGGGAAGGGTGTCGGATTTAAAAGCATGGTCAGGCGGCGACAGAGACACGGGCAGTTTAATTTTCGACATGCCCATCAATCAAAACTACACCCCTACAAACAACACAGTGATAGACCTGTCTGGCAATGGCAATAATGGCACATTCGTTAATGTCGCAGATGGTGACTCTACGCTGTATACGCAGAATAGTGATGGGGATTGGGTAGGAGAAAACCTAGTTGAAAACGGTGGCTTTAGTAGTACCTCTGGGTGGGACGATACAAGTCAGGGAACTGGCACAGCTCAAATAACAGCAGGCAGGGCGATAGTGACAGGAACCACCTTTGCCAATAGAGGGCAGTTGTCACAATCAATAGATACGACAGCAGGTCAGATGTACAGGGTGACGTTTACATGCTTGCAAGACCAGACTGCGTTTATTGTAGTGTCAGAAAGCTTTGGAGGCTCTTTGGAGGTATTCAATATACCTTCTGAAGGTGCGCACTCTTTCACATTCACGGCGACTACGTCATCCACTGATGTGGTTCTACGCTCACAGGGCGGGGAGTCAATATTTGACGATGTGACAGTTGAACCATTCCTAGAGGTAGCCTACTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
ccb0f41ede16448658a3bca6ed7eef5caba587025e1917f219f3bd06b6c0645e
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8463
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Isolation and Genetic Analysis of a Novel Pseudoalteromonas Phage PB15 from the Yellow Sea of China Gao,Y. 2017-04-20 — GenBank