Protein

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Genbank accession
YP_010092404.1 [GenBank]
Protein name
long tail fiber protein proximal connector
RBP type
TF
Evidence UniProt/TrEMBL
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,87
Protein sequence
MSNIMAGFGEGFVETQIMSENNAVRYKLSVAAGLKSSAPSNEYILLQDKPLGEQGNSPGMNVREINLSTNTVISRKIFDFKNGELVGANKSFVDYMTSLVAKDNTIIVLSTGDRLYSSETVDNWFKSVSSPSWPGTWMCSKYPCSYVAFYSVHKKKIIQEHTTYSDGVLRDEDVRAQLEVVYDKFDDIGATGFVKRAIEEVAEASSDTEYEFKRYPSGAPIIALMKDYSITPGSKLKASFELFADKALLDSGQSTRLNFRWFKGSTILTSQANEVPIGQSDRWIKYERYIDVPATADGFTVIAARYPRQDTSVGIGAVRNLILLEVSRQDEAISRSAEFGVNGIRMNKAIDGQNSELLILPDTKDDPSGEIRSAEFREYAKTV
Physico‐chemical
properties
protein length:383 AA
molecular weight: 42560,40100 Da
isoelectric point:5,22569
aromaticity:0,09922
hydropathy:-0,32611

Domains

Domains [InterPro]
DC_0912
STR
1–383
DC_0912
PS52031
LEC
22–197
PS52031
YP_010092404.1
1 383
Architecture
STR
STR 1-383
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010092404.1
1 383
Domain Start End Length (AA) Confidence
N-terminal 1 174 174 0,3704
Central domain 175 372 199 0,3248
C-terminal 373 383 10 0,4370
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-174
Central
175-372
C-terminal
373-383

Taxonomy

  Name Taxonomy ID Lineage
Phage Serratia phage X20
[NCBI] 		2006942 Uroviricota > Caudoviricetes > Pantevenvirales > Tevenvirinae > Winklervirus
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010092404.1 [NCBI]
Genbank nucleotide accession
NC_055728 [NCBI]
CDS location
range 157559 -> 158710
strand +
CDS
ATGTCTAATATTATGGCAGGTTTTGGCGAAGGATTTGTCGAAACTCAAATTATGTCAGAAAATAATGCCGTAAGATATAAACTCTCAGTAGCTGCCGGGCTGAAAAGCTCGGCTCCTTCAAATGAATATATTTTACTGCAGGATAAGCCATTAGGAGAACAAGGAAATTCTCCTGGGATGAATGTTCGCGAAATAAATCTTTCCACCAATACAGTTATCTCCCGTAAAATATTTGATTTCAAAAATGGTGAACTTGTAGGAGCTAATAAAAGCTTTGTCGATTATATGACTTCACTTGTGGCTAAAGATAATACAATTATTGTACTAAGCACCGGGGATAGACTTTATTCTAGCGAAACTGTTGATAATTGGTTCAAATCTGTTTCATCTCCTAGTTGGCCAGGCACATGGATGTGCTCTAAATATCCATGTTCTTACGTTGCGTTTTATTCAGTTCATAAGAAAAAAATCATACAAGAACACACAACTTATTCTGACGGGGTCCTTCGTGATGAAGATGTAAGAGCTCAATTAGAAGTAGTATATGATAAGTTTGATGATATTGGAGCCACTGGATTTGTTAAAAGAGCTATAGAAGAAGTTGCCGAAGCTTCTAGCGACACAGAGTATGAATTTAAACGATATCCTTCTGGAGCACCTATCATTGCTTTGATGAAGGATTATTCTATTACCCCAGGTTCAAAGCTTAAGGCTTCTTTTGAGCTATTTGCAGATAAAGCGCTTCTAGATTCAGGGCAATCCACTAGATTAAATTTTAGATGGTTTAAAGGAAGTACGATTCTGACGTCTCAGGCTAACGAGGTGCCCATCGGACAATCAGATAGATGGATAAAGTACGAACGATATATAGACGTTCCTGCTACTGCTGACGGCTTCACGGTAATTGCTGCTCGATATCCTCGTCAAGATACTAGCGTAGGCATAGGAGCTGTAAGAAATTTAATCCTTCTTGAAGTTTCTAGACAAGATGAAGCAATTAGTAGATCAGCTGAATTTGGTGTAAATGGTATAAGAATGAATAAAGCTATAGATGGACAGAATAGTGAACTTCTTATTCTTCCAGACACTAAAGATGACCCATCCGGTGAAATTAGATCTGCCGAATTTAGAGAATACGCAAAAACTGTATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
a2cd1868cbe70b4010ba024f4475fa40505ba17b602ff931321c283c7b4598c3
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6409
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Environmental T4-family bacteriophages evolve to escape abortive infection via multiple routes in a bacterial host employing #altruistic suicide# through Type III toxin-antitoxin systems Chen,B., Akusobi,C., Fang,X. and Salmond,G.P.C. — — GenBank