Protein

Genbank accession
AVJ48878.1 [GenBank]
Protein name
glycerophosphoryl diester phosphodiesterase
RBP type
TSP
Evidence RBPdetect
Probability 0,90
Protein sequence
MIEPEVKLLMLKGDKGDGLSDDDMHKVESLIDSNVDEAKGSLSKSLSAQLEVARIDDMNQTKSFVTSSVVDAKEEINRTVNARIAGARFIPKVFANAYDLKNAYPKGQDGIFVVADTGHMWLFVNGSWKDCGVYQTPVQKNQTFTFQPSRDGFPNYDTATHKLDFRCITDSAQITTPSGDAYRIPRYTVVDVNWEFTTGVIIFDTNTLSVISQSPYIPINANQYVLASYRRYPAEGDRLTWNGVLAQSLLINGETYMEQNVQFVPSKDGLPYYDSKRKIINFNCLTDQAYVSYQNRNYTLPHNATVALDFSRGVTSFDILIDMKTGKVSANDKYRLLTPNMEKVSLATVRLLNNGKVAIEGIKLLDEVSPKNSTGIIPIAHRGLNSIAPEESLEAYSLAVRSGYNDIECDIYFTEDGIPVLHHDATINSIARNSDGTELTQPVKIGERMLVELNAYDYGIYKSEIFKGLNICTFEDIIKFARRTGARVHAELKQHYTDEQCQVLLDIVSKYRMTGKVGWQAFDHSSLDYIASHDENAQLELLAGGITDDLIADGKKRLNGKRKVVLSVGQGVTQRLVDQVHSEGFDVYVWTVDDIDGAKKLVNMGVDGIMTNGYIDLPNLLSNEYDLQVSNSPAVDLVTNLTWYKNTYIGSDGKIWNLLNNIKDGEEHLSPKGSSGEHFQTIVPLTKTTYTLSFEAKSTVNGDKIASFLYDGGDGSQDCVTHINGVATNDGDGRIETTLTDSYKRYSIQYTINPKNIKMTAIIARTDISTGDVTFKNIRLTEGTDSAWGATNNMLSYLDVKRGETYYARQLDESSWLNAPMVVTNDNLNVVQSSVITDSVNHTFKVIIPSEATKLFLNSNEVLVPTVFKQSSSSGI
Physico‐chemical
properties
protein length:876 AA
molecular weight: 97345,22290 Da
isoelectric point:5,17732
aromaticity:0,08790
hydropathy:-0,31678

Domains

Domains [InterPro]
IPR017946
369–621
IPR017946 G3DSA:2.60.120.260
PTHR46211
371–614
PTHR46211
IPR030395
376–621
IPR030395
IPR017946
378–612
IPR017946
cd08556
379–612
cd08556
IPR030395
381–612
IPR030395
PS50007
385–429
PS50007
AVJ48878.1
1 876
Legend: Pfam SMART CDD TIGRFAM HAMAP SUPFAM PRINTS Gene3D PANTHER Other

Taxonomy

  Name Taxonomy ID Lineage
Phage Lactobacillus phage PMBT4
[NCBI] 		2099651 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AVJ48878.1 [NCBI]
Genbank nucleotide accession
MG913376 [NCBI]
CDS location
range 11830 -> 14460
strand +
CDS
ATGATCGAACCAGAAGTTAAACTTTTAATGTTGAAGGGCGACAAAGGCGATGGCCTTTCAGACGATGACATGCACAAAGTTGAGTCGCTGATTGACTCCAATGTTGACGAGGCGAAAGGAAGCCTCAGCAAATCATTAAGCGCACAGCTTGAAGTTGCGAGAATTGACGACATGAACCAAACCAAGTCGTTTGTCACTTCCAGCGTGGTTGATGCGAAGGAAGAAATTAACAGAACAGTAAATGCGAGAATTGCGGGTGCTAGATTTATCCCGAAAGTATTCGCCAACGCTTACGATCTGAAAAATGCGTATCCTAAAGGCCAAGACGGCATTTTCGTTGTAGCGGATACCGGGCACATGTGGTTATTCGTCAACGGTTCTTGGAAAGATTGTGGAGTATATCAAACCCCAGTTCAGAAAAATCAGACGTTTACGTTCCAACCTTCTAGGGACGGCTTCCCGAATTATGATACGGCAACGCACAAACTTGACTTTAGATGTATTACAGATAGCGCACAGATCACGACACCAAGCGGTGATGCTTATAGAATTCCTCGGTATACGGTAGTAGACGTTAACTGGGAATTTACCACTGGTGTCATTATCTTTGATACGAATACCTTGTCCGTCATTTCACAGTCGCCGTATATTCCCATCAACGCAAATCAGTACGTCTTAGCTAGTTATAGAAGATACCCAGCTGAAGGAGACCGACTTACTTGGAACGGTGTTTTAGCGCAAAGTCTGCTGATTAATGGAGAGACCTACATGGAACAAAACGTTCAGTTCGTTCCATCAAAAGATGGCTTACCATACTACGATAGCAAGCGGAAAATCATTAATTTCAATTGCCTCACCGACCAAGCCTACGTCTCTTACCAAAATCGCAACTACACGTTGCCACATAATGCTACTGTCGCTCTTGACTTCTCCCGTGGTGTAACTTCCTTCGACATCTTAATAGACATGAAGACGGGGAAGGTCAGCGCCAACGACAAGTATCGTTTGTTAACGCCAAACATGGAAAAAGTTTCACTTGCGACCGTTAGACTTTTGAATAATGGCAAAGTTGCGATTGAAGGCATTAAATTGCTAGATGAGGTTAGCCCGAAGAATAGCACCGGGATCATTCCAATCGCACACCGTGGTCTTAATTCGATTGCTCCGGAAGAAAGCTTGGAGGCCTATTCTTTGGCCGTAAGAAGCGGCTACAACGATATTGAGTGCGACATTTACTTTACGGAAGACGGCATTCCTGTTTTGCACCATGATGCCACTATTAACAGTATTGCCCGCAATTCAGATGGTACTGAGTTGACGCAACCGGTAAAAATTGGCGAACGAATGTTAGTAGAATTAAACGCCTATGACTACGGGATTTATAAGTCTGAGATCTTCAAAGGCCTCAATATTTGCACATTTGAAGACATCATCAAGTTCGCTCGCAGAACCGGGGCAAGAGTTCATGCTGAGCTGAAGCAACATTATACCGATGAACAATGCCAAGTGCTTTTAGACATCGTTTCTAAGTATAGAATGACGGGAAAGGTTGGGTGGCAAGCGTTTGATCATTCCAGCTTGGATTATATTGCTAGTCATGACGAAAATGCACAGTTGGAGTTGTTAGCTGGAGGCATTACCGATGATTTAATTGCTGACGGCAAAAAGCGGCTTAATGGCAAGAGAAAAGTCGTTCTTAGCGTAGGGCAAGGCGTAACGCAACGATTAGTTGACCAAGTTCATTCAGAAGGGTTTGATGTTTACGTTTGGACTGTTGATGATATTGATGGAGCTAAAAAGTTGGTAAACATGGGCGTAGACGGGATCATGACCAACGGCTACATTGATCTTCCAAATCTGCTGAGTAACGAATACGACTTGCAAGTTTCTAATTCTCCTGCGGTTGATTTAGTAACTAATTTGACTTGGTATAAGAACACGTACATTGGCAGTGACGGAAAAATTTGGAATCTTCTCAACAATATAAAAGACGGAGAAGAGCACTTATCTCCTAAGGGCAGTTCCGGAGAACATTTCCAGACTATTGTCCCGCTTACTAAGACAACGTATACATTGTCTTTTGAAGCAAAATCCACTGTAAATGGGGACAAAATTGCAAGCTTCTTGTACGATGGAGGAGACGGCAGTCAGGATTGTGTAACTCATATTAACGGGGTTGCTACAAATGATGGCGATGGTCGTATTGAGACTACGCTAACTGACAGCTATAAGCGATACTCTATCCAATATACGATAAACCCTAAAAATATTAAGATGACTGCTATTATAGCAAGAACAGACATTTCGACTGGAGATGTCACCTTTAAGAACATTAGACTTACAGAAGGAACGGATAGCGCTTGGGGCGCAACGAATAATATGCTATCGTATTTAGACGTCAAACGAGGTGAGACGTACTATGCAAGACAACTAGATGAGTCATCATGGTTAAATGCGCCAATGGTAGTTACAAATGATAATCTTAATGTCGTTCAATCAAGCGTAATCACTGACTCCGTAAACCATACGTTTAAGGTTATAATCCCAAGCGAAGCCACTAAGCTTTTCTTGAACTCTAATGAGGTACTTGTTCCAACGGTATTCAAGCAATCTTCCTCTAGCGGCATTTAA

Gene Ontology

No Gene Ontology terms available.

Enzymatic activity

No enzymatic activity data available.

Tertiary structure

PDB ID
d61c1e7bd7382a873a3fd13f8ddd1554dc1e3158897562fead25b8918d14b22d
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,2523
Evidence 0,2523
Download PDB

Literature

Title Authors Date PMID Source
Novel Siphoviridae phage PMBT4 belonging to the group b Lactobacillus delbrueckii subsp. bulgaricus phages Sprotte,S., Fagbemigun,O., Brinks,E., Cho,G.-S., Casey,E., Oguntoyinbo,F.A., Neve,H., Mahony,J., van Sinderen,D. and Franz,C.M. 2022 34808252 GenBank