Protein

View in Explore
Genbank accession
AGN12101.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 0,97
Protein sequence
MSQLNVGTVNAATINYTGDSTSSTSANRSLEDMTNVSGTPGTNQSLTWTGSAWAPATNQQNIVKVWAHGGTTVNQTISSRRGTSTSNMTYINGTEVDCGVPSGSNNWHRVYWWTVTDDSGGPSNPDGFGFGLYRNVNNGGWSRILDMGSHSHYVNGLSDWYEIGTFFAYVPVVNNTQNHKYRIYMDRHNDVNYRVNCGIGDDYRRNGWNNAVMEIWEIDNTNFSTNSFTRY
Physico‐chemical
properties
protein length:231 AA
molecular weight: 25718,54400 Da
isoelectric point:5,79953
aromaticity:0,12121
hydropathy:-0,67922

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AGN12101.1
1 231
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,0166
Central domain 11 209 200 0,0064
C-terminal 210 231 21 0,9982
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-209
C-terminal
210-231

Taxonomy

  Name Taxonomy ID Lineage
Phage Prochlorococcus phage P-SSM3
[NCBI] 		536453 Uroviricota > Caudoviricetes > Pantevenvirales > Ronodorvirus > Ronodorvirus pssm3
Host Prochlorococcus marinus str. NATL2A
[NCBI] 		59920 Bacteria > Cyanobacteria > Prochlorales > Prochlorococcaceae > Prochlorococcus >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AGN12101.1 [NCBI]
Genbank nucleotide accession
HQ337021.1 [NCBI]
CDS location
range 116792 -> 117487
strand +
CDS
ATGTCTCAACTCAACGTTGGAACTGTAAATGCAGCGACAATAAATTATACAGGAGACTCAACGAGTTCAACTTCAGCGAATAGGTCACTAGAGGACATGACCAACGTGTCAGGTACACCTGGTACTAATCAATCTCTGACATGGACAGGAAGTGCGTGGGCACCTGCAACAAATCAACAGAATATCGTAAAGGTATGGGCACATGGTGGTACTACTGTAAACCAAACTATTAGTAGTAGAAGAGGTACTAGCACCAGTAATATGACATATATTAATGGTACTGAAGTAGATTGTGGTGTACCTTCGGGATCAAATAACTGGCATAGAGTTTACTGGTGGACTGTGACAGATGACTCAGGTGGCCCATCAAACCCTGATGGATTTGGATTTGGTCTATACAGAAACGTAAACAATGGAGGATGGAGTAGAATCCTTGACATGGGTTCACACTCACATTATGTTAACGGATTATCTGATTGGTATGAGATAGGAACATTCTTTGCTTATGTACCTGTTGTAAACAATACACAGAATCATAAGTATAGGATATACATGGATAGACATAATGATGTAAACTATCGTGTTAATTGTGGTATTGGAGACGACTACAGAAGAAACGGATGGAACAACGCAGTTATGGAAATCTGGGAGATAGATAATACTAACTTCTCAACTAATAGCTTTACGAGGTATTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
31978f7404347ba4cf3348f1910ec7f9040cc15e4a17fffec1b1c61235bd4f4a
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7247
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
The Genome Sequence of Prochlorococcus phage P-SSM3 Henn,M.R., Sullivan,M.S., Osburne,M.S., Levin,J., Malboeuf,C., Casali,M., Russ,C., Lennon,N., Chapman,S.B., Erlich,R., Young,S.K., Yandava,C., Zeng,Q., Alvarado,L., Anderson,S., Berlin,A., Chen,Z., Freedman,E., Gellesch,M., Goldberg,J., Green,L., Griggs,A., Gujja,S., Heilman,E.R., Heiman,D., Hollinger,A., Howarth,C., Larson,L., Mehta,T., Pearson,M., Roberts,A., Ryan,E., Saif,S., Shea,T., Shenoy,N., Sisk,P., Stolte,C., Sykes,S., White,J., Yu,Q., Coleman,M.L., Huang,K.H., Weigele,P.R., DeFrancesco,A.S., Kern,S.E., Thompson,L.R., Fu,R., Hombeck,B., Chisholm,S.W., Haas,B., Nusbaum,C. and Birren,B. 2011-09-23 — GenBank