Protein

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Genbank accession
YP_011108611.1 [GenBank]
Protein name
putative structural protein
RBP type
TF
Evidence RBPdetect
Probability 0,89
TF
Evidence RBPdetect2
Probability 0,85
Protein sequence
MADINDGLDLGTDRIDDISNGIGVVPGDKTDLDKQDTTITNPPTLDKVNEPDDKGTKGDKGDTKVDDSSTGDVELTEGMSVVLGDAELTIDKDGNAVDKDGNVVKTKEELLKLIAENGVEKEDAKTLIQSIQEKFGIEVKDDKGNPIEFENTPEGINSYIDTVLETREQEIATQAVDTLFNTYPALKQALNHIKVNGSLEGFNEIEDRTNVVIDKDNKEQQIATIKEQWKLQGVKGNVDSYIAYLESAGTLYDTAIESNETIKEIHKEAIQKQEAAAAAADAAAAEQEKQYWSSVDSTLNKGELAGYKIPDTIPVVRDGKKMVMTKADFKNYISRPVDANGYTQYELDEMKRDQNSIIEDDLLRAYLRFTGGDYSSLVGMAINKEKVNKLRIAADKASKRTLVINSKKNDSKGKIDNNELILE
Physico‐chemical
properties
protein length:423 AA
molecular weight: 46576,18510 Da
isoelectric point:4,55504
aromaticity:0,04728
hydropathy:-0,67896

Domains

Domains [InterPro]
Coil
Unmapped
270–290
Coil
YP_011108611.1
1 423
Architecture
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Caudoviricetes sp. 'Rudgehvirus jaberico'
[NCBI] 		3028515 Uroviricota > Caudoviricetes > Crassvirales > Crudevirinae >
Host Bacteroides cellulosilyticus
[NCBI] 		246787 cellular organisms > Bacteria > Pseudomonadati > FCB group > Bacteroidota/Chlorobiota group > Bacteroidota

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_011108611.1 [NCBI]
Genbank nucleotide accession
NC_091965 [NCBI]
CDS location
range 5155 -> 6426
strand +
CDS
ATGGCAGATATTAATGATGGACTTGATTTAGGTACTGATAGAATAGATGATATTTCTAACGGTATTGGTGTTGTTCCCGGAGATAAGACAGATCTCGATAAACAGGATACAACTATTACTAATCCTCCTACTCTTGATAAAGTAAATGAACCTGATGATAAAGGAACTAAGGGAGACAAAGGAGATACGAAAGTTGACGACTCCTCTACAGGGGATGTAGAACTAACAGAGGGTATGTCTGTTGTTCTTGGTGATGCAGAACTTACTATTGATAAAGACGGTAATGCAGTTGATAAAGATGGAAATGTAGTTAAGACTAAAGAAGAACTTCTTAAATTAATTGCAGAGAACGGAGTTGAGAAAGAAGATGCTAAAACTCTTATTCAATCTATTCAAGAAAAGTTTGGTATTGAAGTTAAAGATGATAAAGGTAATCCTATAGAATTTGAAAATACTCCTGAGGGTATTAATTCTTATATAGATACTGTTCTTGAAACAAGAGAACAAGAAATTGCTACTCAAGCTGTTGATACTTTATTCAATACTTATCCTGCATTGAAACAAGCATTAAATCATATTAAAGTTAACGGTAGTCTTGAAGGATTTAATGAAATTGAAGACAGAACTAATGTAGTTATTGACAAAGATAACAAAGAGCAACAAATTGCTACTATTAAAGAACAATGGAAGTTGCAAGGAGTAAAAGGAAACGTTGATTCTTATATTGCTTATCTTGAATCTGCTGGAACTCTTTATGATACAGCTATTGAATCTAATGAAACAATTAAAGAGATTCATAAAGAAGCTATTCAAAAGCAAGAAGCTGCTGCCGCTGCTGCTGATGCTGCTGCTGCTGAACAAGAAAAACAATATTGGTCAAGTGTAGATTCTACTCTTAATAAAGGAGAACTTGCAGGATATAAAATTCCTGATACTATTCCTGTTGTTCGTGACGGAAAGAAAATGGTAATGACTAAAGCTGACTTTAAGAATTACATTTCTCGTCCTGTTGATGCAAATGGTTATACCCAGTATGAATTAGATGAAATGAAGAGAGATCAAAATTCTATTATTGAAGATGATTTACTTCGTGCTTATCTACGTTTTACAGGTGGTGATTATAGTAGTCTTGTAGGAATGGCTATAAATAAAGAAAAAGTTAATAAACTTAGAATAGCTGCTGATAAAGCCTCAAAAAGGACTCTTGTTATAAATAGTAAGAAAAATGATTCTAAAGGTAAGATAGATAATAATGAACTAATTCTTGAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
72d5a86d7177921cc8386a44585659357f9263b3fda155a0fd1b37b686594d1f
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7496
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Host interactions of novel Crassvirales species belonging to multiple families infecting bacterial host, Bacteroides cellulosilyticus WH2 Papudeshi,B., Vega,A.A., Souza,C., Giles,S.K., Mallawaarachchi,V., Roach,M.J., An,M., Jacobson,N., McNair,K., Mora,M.F., Pastrana,K., Boling,L., Leigh,C., Cram,C., Plewa,W.S., Grigson,S.R., Bouras,G., Decewicz,P., Luque,A., Droit,L., Handley,S.A., Wang,D., Segall,A., Dinsdale,E.A. and Edwards,R.A. 2023 — GenBank