Protein

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Genbank accession
YAA51004.1 [GenBank]
Protein name
virion structural protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,90
Protein sequence
MATNWIRQEIKNPVGVNKSLDPTDVPPQLWTDVRNVSFKGGRARKTQGHSQTFGTPGGDPYYLLSAVRDGILYWIYPTLTSIYRTEGSSHTDISRAGDPYSGDETNYWNGGVLNSVPVLNNGVDVPQAWPYGSSEFEDISSWPSTLRAKVIRPYKNYLIALNLTDNSVLEPHSVAWSTAADPGFVPDSWAFNDPTKESGKAFLADTSGAIVDGKPLRDMFIIYKEDAVYSMRYVGGVFVWQFRQIFNDVGMMAQDCAAEFEGQHFVVTQGDVYIHNGVNKKSIIDNQNREYLFSAIDPQYFSRTRVIADYSRTEMWICFVSTDSTTGYCDTALIYNWIEGTWTIRDLPNIYAGAYGVVDPQTADDWDIDNDQWNVDSTVWNDRNYNPSKLKVLLCSPEDTKIYLVGDISLFDSSTFTSTLEKTSMYFDDDHSFKSIQSITPHVTGDGVITARVGYQRVQADPITWTGPYTFEIGTDYKIDCKVTGRYLSVRFDIESTSEWVFNGYTLEGNSTIGTR
Physico‐chemical
properties
protein length:516 AA
molecular weight: 58126,80220 Da
isoelectric point:4,66218
aromaticity:0,13178
hydropathy:-0,39322

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YAA51004.1
1 516
Domain Start End Length (AA) Confidence
N-terminal 1 385 385 0,7544
Central domain 386 505 121 0,1479
C-terminal 506 516 10 0,9943
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-385
Central
386-505
C-terminal
506-516

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage VpT
[NCBI] 		3447162 Viruses >
Host Vibrio parahaemolyticus
[NCBI] 		670 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YAA51004.1 [NCBI]
Genbank nucleotide accession
PV847829 [NCBI]
CDS location
range 29994 -> 31544
strand +
CDS
ATGGCAACTAACTGGATCAGACAAGAAATCAAGAACCCGGTAGGTGTCAATAAGTCACTGGACCCTACGGACGTACCACCTCAGCTTTGGACTGATGTTCGTAACGTATCGTTCAAGGGTGGTAGAGCTAGGAAGACTCAAGGCCACAGCCAGACCTTTGGCACACCAGGGGGTGATCCTTATTACCTCCTGAGTGCTGTACGTGACGGTATCCTCTATTGGATTTACCCTACGCTTACTTCCATCTATCGTACTGAAGGTTCTAGCCACACAGATATTTCTCGCGCTGGAGACCCTTACTCTGGCGATGAGACCAACTACTGGAATGGTGGGGTGCTCAACTCGGTACCAGTGCTGAATAATGGTGTAGATGTTCCTCAGGCTTGGCCGTATGGTTCCTCTGAGTTCGAAGATATCTCCAGCTGGCCATCTACCCTCAGGGCTAAAGTAATCAGGCCTTACAAGAACTACCTGATCGCTCTGAACTTAACGGACAACTCTGTGCTTGAGCCTCACAGCGTAGCATGGAGTACAGCTGCTGATCCAGGGTTTGTACCCGATAGTTGGGCCTTTAACGATCCAACCAAAGAGTCTGGTAAGGCATTCCTTGCAGATACCTCTGGTGCTATCGTCGATGGTAAACCCCTAAGAGATATGTTCATCATCTACAAGGAAGATGCTGTGTACTCGATGCGCTACGTTGGTGGTGTCTTCGTGTGGCAGTTTAGGCAAATCTTCAACGATGTAGGCATGATGGCTCAGGACTGTGCAGCTGAGTTCGAGGGTCAACACTTTGTCGTAACCCAAGGTGATGTATACATCCACAATGGGGTGAACAAGAAGTCTATCATTGACAACCAGAACCGAGAGTATCTCTTCTCTGCTATCGATCCTCAGTACTTCTCAAGGACCAGGGTTATCGCAGACTACTCTAGGACGGAGATGTGGATTTGCTTTGTGAGTACCGACAGCACGACTGGGTACTGTGACACTGCTCTGATTTACAACTGGATCGAGGGGACTTGGACAATCCGAGACCTCCCTAATATCTACGCTGGCGCTTACGGTGTAGTAGACCCTCAGACTGCTGACGACTGGGATATTGACAATGACCAGTGGAACGTAGACTCTACAGTGTGGAACGACAGGAACTACAACCCGTCCAAGCTTAAGGTTCTCTTGTGTTCTCCAGAGGATACCAAGATTTACCTTGTGGGTGATATCTCGTTGTTCGACTCAAGTACCTTTACGAGTACCCTTGAGAAGACATCGATGTATTTCGACGATGACCACTCCTTCAAGAGTATCCAGTCGATTACTCCCCACGTAACAGGTGATGGGGTTATCACTGCAAGGGTTGGCTATCAGAGGGTTCAGGCTGATCCAATCACATGGACTGGACCTTATACGTTCGAGATTGGTACTGACTACAAGATCGACTGTAAGGTTACTGGTAGGTATCTCTCTGTGCGATTCGACATTGAGTCTACCAGCGAATGGGTCTTCAATGGATATACGCTTGAAGGTAACTCCACTATAGGTACACGCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
e9c77b9e8c9e489a7dd489fb5f9ddfa8a68c811a3501c95d58633a0803dc1dea
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,8999
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50