Protein

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Genbank accession
YP_010755212.1 [GenBank]
Protein name
glycoside hydrolase
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MTIHDDALSAFRAVYDDELAGKEDQITALAESLADAESARDTALQELNVSKNLLATSFEQIENLSATVRAREAAIAELQARIKELEGQIAPPAPVRPEGAGFVKAESLTKKATLTATYAAAPSGSQITLPAETAEFGDFTMYDTRTVGAYGIGVYLVKGLRGLRGSGIDKSIVRQTPGVSTRKSQVPPNPPAGTVNYLNAGTNNLYYVRLGNTDGAVTVTDLTIQGTDQGHEYNGLQIYEAQESLLERVKVTGIPGSSSANPGETFSINIFRSHKTTARNIEIDGRRDGVAVAAAAIGVNFSDNVLIENSYLHDTKYGHGIAWFTCNNATMRNVKFRNIGGEVCANFERMAGTVILEKCDFGSGGRQAHMMLQSDTTSAVVKIIDPIFTGEKFNLRTGGGYQGNPNKQIVSDIKLIINGVERPDLLNIMR
Physico‐chemical
properties
protein length:430 AA
molecular weight: 46196,37840 Da
isoelectric point:5,55109
aromaticity:0,06512
hydropathy:-0,24000

Domains

Domains [InterPro]
Coil
Unmapped
19–39
Coil Coil IPR011050
IPR012334
STR
112–419
IPR012334
IPR039448
ENZ
213–361
IPR039448
IPR006626
Unmapped
214–240
IPR006626 IPR006626 IPR006626 IPR006626
YP_010755212.1
1 430
Architecture
STR
STR 112-419 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_010755212.1
1 430
Domain Start End Length (AA) Confidence
N-terminal 1 102 102 0,9444
Central domain 103 419 318 0,9884
C-terminal 420 430 10 0,1549
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-102
Central
103-419
C-terminal
420-430

Taxonomy

  Name Taxonomy ID Lineage
Phage Microbacterium phage Pumpernickel
[NCBI] 		2885983 Uroviricota > Caudoviricetes > Pumpernickelvirus >
Host No host information

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_010755212.1 [NCBI]
Genbank nucleotide accession
NC_073468 [NCBI]
CDS location
range 128543 -> 129835
strand +
CDS
ATGACCATTCATGATGACGCACTCTCGGCATTCCGAGCAGTGTACGACGATGAGCTAGCCGGTAAGGAAGACCAGATTACCGCTCTCGCAGAGAGCCTTGCAGACGCCGAGAGCGCCCGCGATACGGCTCTACAGGAGTTGAATGTCTCCAAGAACCTTCTGGCTACCTCATTTGAGCAGATCGAAAATCTTTCAGCTACGGTTCGCGCTCGCGAAGCCGCTATCGCAGAGCTACAGGCCCGGATCAAGGAGCTTGAAGGCCAGATTGCTCCGCCTGCGCCTGTCCGTCCTGAAGGTGCAGGTTTCGTGAAGGCAGAAAGCCTCACCAAGAAGGCGACCCTCACGGCAACCTACGCTGCCGCTCCTAGCGGATCGCAGATCACGCTTCCTGCCGAGACCGCTGAGTTCGGTGACTTCACTATGTACGACACTCGTACTGTGGGTGCATACGGAATCGGCGTGTACCTCGTCAAGGGCCTTCGTGGTCTCCGTGGTTCTGGCATTGACAAGAGCATTGTCCGCCAGACGCCGGGAGTTTCGACTCGAAAGAGCCAGGTCCCTCCGAACCCGCCTGCGGGAACGGTGAACTACCTCAACGCCGGGACCAACAACCTCTACTACGTTCGTCTGGGTAACACGGACGGGGCTGTAACGGTCACCGACCTGACCATTCAGGGCACAGATCAGGGTCATGAGTATAATGGTCTCCAGATTTACGAGGCCCAGGAATCTCTACTTGAGCGCGTGAAGGTCACCGGAATCCCCGGAAGCTCTAGCGCCAACCCTGGCGAGACATTCAGCATCAACATCTTCCGCTCGCACAAGACCACGGCCCGCAACATCGAGATCGATGGTCGCCGTGACGGTGTGGCGGTGGCGGCTGCGGCTATCGGTGTCAACTTCTCCGACAACGTGCTCATCGAGAACTCCTACCTACACGACACCAAGTACGGTCACGGTATCGCCTGGTTTACCTGCAACAACGCCACGATGCGTAACGTCAAGTTCCGCAACATCGGTGGCGAGGTCTGCGCCAACTTCGAGCGCATGGCGGGCACGGTCATCCTGGAGAAGTGTGACTTCGGCTCCGGAGGACGCCAGGCCCACATGATGCTTCAGTCGGACACGACCAGTGCTGTCGTGAAGATCATCGATCCGATTTTCACCGGAGAGAAGTTCAACCTCCGCACAGGCGGTGGCTACCAGGGCAATCCCAACAAGCAGATCGTCTCGGACATCAAGCTCATCATCAACGGTGTTGAGCGTCCTGATCTACTAAATATCATGAGATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
6803d5ee10818fa74d920ee3ed7755676a384dc6ebf60c10bf5c1c320a778d70
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7810
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50