Protein

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Genbank accession
WYM31532.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,91
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MVTSTRITTAQATHKDENLEVYLDNLDSQVTDISNGLIRGYLIPSDANLTNSIDDAGLASLSALSLSSGLPVVFVGNTTITLASDFTWSFNFRVGGTLTINSLTTRLIKVASNNIKFDHVTFGKGVSVQLDSTLSKLDNLSFTHCDFLSGSITSIGTNRNFRLKIRGCRFLSQDLNVSNLMQFKDWAYLSVKYCRGRYPTNSFILINPSYSYTSYNIKIKGNTFTNGALFGIALAGAAEIGVINDYQIVNNTIHCNSTVNTRTLVLQNSHGGIIHGNNLSGGIVVAAGGCYDVSYKDNTTTATSDPAMRLQNCSGWSSSGNASYIPSTSQYHVTSETASITQRGRAGRSSFSGNTYYGGTRGIAMLSGYGYSIGQETFITPDADNSVGRVYIAPSAFASSIEGDQRGLAPTGVVAVSNTAANSVVDGFALQGTGGSTITAVVNGAIVTALHGKTYHFTVDLNNNMNNIQSACDGLGTKKAVSTWTAGIAGAKLSINASPFGASGRVQDSFANGAPVPYTTPSDLTGVYAGCAIHRDGYMHCRYMPQNQLDLNEFIYPQMHDYLWQSAFFNIPLIINGAVSSFAHDLSANPRTAIGQTATGLFHVIVVDGRNADSAGCTTVELANYLLAQGCVTAFNLDGGGSSTIWYNGSVINVPSDGSERLVGQAWVFK
Physico‐chemical
properties
protein length:670 AA
molecular weight: 71144,59300 Da
isoelectric point:6,52400
aromaticity:0,09254
hydropathy:-0,01776

Domains

Domains [InterPro]
IPR006626
Unmapped
214–236
IPR006626 IPR006626 IPR006626 IPR006626 IPR006626 IPR018711
IPR018711
STR
566–669
IPR018711
PTHR40446
Unmapped
588–666
PTHR40446
WYM31532.1
1 670
Architecture
STR
STR 565-669 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
WYM31532.1
1 670
Domain Start End Length (AA) Confidence
N-terminal 1 46 46 0,8593
Central domain 47 426 381 0,9731
C-terminal 427 670 243 0,7967
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-46
Central
47-426
C-terminal
427-670

Taxonomy

  Name Taxonomy ID Lineage
Phage Erwinia phage VL73
[NCBI] 		3136638 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Erwinia sp.
[NCBI] 		558 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
WYM31532.1 [NCBI]
Genbank nucleotide accession
PP556867 [NCBI]
CDS location
range 38059 -> 40071
strand +
CDS
ATGGTTACTAGTACTAGAATCACAACTGCTCAAGCAACTCACAAAGATGAGAACCTTGAGGTTTATTTAGACAATCTGGATAGTCAGGTTACAGATATTTCAAATGGATTAATCAGGGGCTACCTTATCCCTAGTGATGCTAACCTAACTAACAGCATTGACGATGCAGGGTTAGCAAGCCTTAGTGCATTATCATTGTCATCAGGGTTACCAGTAGTATTTGTTGGTAACACTACAATCACCTTGGCAAGTGATTTTACTTGGTCTTTTAATTTCCGTGTTGGTGGTACTCTTACAATCAACTCACTTACTACTCGCCTCATTAAGGTAGCAAGTAATAACATTAAGTTTGACCATGTAACCTTTGGCAAGGGTGTTAGCGTACAGCTGGATAGTACACTGTCTAAGCTTGATAACTTAAGCTTTACTCATTGTGACTTCCTATCAGGCAGCATTACCAGCATTGGCACTAACCGTAACTTTCGGTTGAAGATTCGTGGTTGCAGATTCTTATCACAAGACCTGAATGTATCCAACCTTATGCAGTTTAAGGATTGGGCTTATCTGAGTGTTAAGTATTGTAGAGGAAGGTATCCTACAAACTCCTTCATTCTAATTAACCCTTCATATTCTTATACTTCATACAATATTAAGATTAAAGGGAATACATTCACAAATGGTGCCTTGTTTGGTATCGCACTTGCAGGGGCTGCTGAGATTGGTGTAATTAATGATTATCAAATTGTTAATAACACAATTCACTGTAACTCTACTGTGAACACAAGGACTCTAGTACTACAGAACTCTCACGGCGGTATCATTCATGGTAATAACTTATCAGGTGGTATCGTAGTTGCAGCTGGTGGTTGCTACGATGTTTCCTATAAGGACAACACTACTACAGCAACCTCAGACCCTGCTATGAGATTACAGAACTGTTCAGGTTGGTCATCATCTGGTAACGCTTCTTATATCCCTAGCACCTCTCAATATCATGTAACATCTGAGACTGCATCTATTACACAGAGGGGCCGTGCTGGTCGTAGTTCATTCTCTGGTAATACTTACTATGGTGGTACTCGTGGTATCGCTATGCTAAGTGGTTATGGTTATAGTATTGGTCAGGAGACTTTCATCACACCAGATGCTGATAACTCTGTTGGTCGAGTTTATATAGCTCCTAGTGCTTTCGCTAGTAGCATTGAAGGTGACCAGCGTGGATTAGCACCTACAGGTGTTGTGGCAGTTAGTAATACAGCAGCTAACTCAGTTGTTGATGGATTTGCATTACAGGGAACTGGCGGGAGCACTATAACAGCGGTAGTTAACGGTGCAATCGTAACAGCACTTCACGGCAAGACCTATCACTTTACTGTTGACCTGAATAATAACATGAATAATATTCAGAGCGCTTGTGATGGACTAGGTACTAAGAAAGCTGTTAGTACTTGGACAGCTGGAATAGCTGGTGCCAAGCTGTCTATCAACGCCTCACCTTTCGGAGCTAGTGGAAGGGTGCAAGATAGCTTTGCTAACGGTGCCCCTGTGCCTTATACAACTCCATCTGATTTAACTGGAGTATATGCAGGCTGTGCTATTCATCGTGATGGCTACATGCACTGTCGTTATATGCCTCAGAACCAATTGGATTTGAATGAGTTCATCTACCCTCAGATGCATGATTACTTGTGGCAGAGTGCTTTCTTTAATATTCCATTAATCATTAATGGAGCAGTAAGTAGCTTTGCACATGACTTATCAGCTAACCCAAGAACTGCTATCGGTCAGACGGCTACAGGGTTATTCCATGTTATCGTTGTAGACGGACGTAATGCTGACTCAGCTGGTTGTACTACAGTAGAGCTAGCTAACTACTTATTAGCACAAGGCTGTGTTACAGCTTTCAACCTTGATGGAGGTGGCAGCAGCACTATCTGGTATAATGGCTCAGTTATCAATGTCCCATCTGATGGCTCTGAGCGACTTGTAGGGCAAGCATGGGTATTTAAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
b1c6f27b2d343f9d449a315e40983d50bef7f08349a80ec85628077336896751
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7802
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Could bacteriophages be used as a novel pest management tool to control gut endosymbionts in Western Flower Thrips? Krueger,S., Kroj,A., Lehnherr,T., Lehnherr,H. and Stuiver,M. 2024 — GenBank