Protein

View in Explore
Genbank accession
UKH49714.1 [GenBank]
Protein name
tail tubular protein B
RBP type
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect2
Probability 0,60
Protein sequence
MALISQSIKNLKGGVSQQPDILRFPDQGAAQINGWSSDNEGTQKRPPSVFRKVIAGQGDLGVKPLVHLINRDAVEQYYAVFTGSDVRVFGLDGTEYTVRGDKSYVQVANPRVDLRMITVADYTFVVNRNVVVTNNDDQSNGGSFNDKQDALINVRGGQYGRVLEVTVNGVLVAKFEIPDGSNPVDSKSTDAQFIAKTLADQMMGVGTLPADVTKLPTGWTATVGNGYIHIVAPSGSQIDSLKAQDGFANQLIAAVTHYSQSFTKLPVEAPNGYKVKIMGDTSKTADQYYVEYDTTRKVWRETIGWNVSQTLTESTLPWTLVRAADGQFDFGTHSWSPRESGDDVTNPHPSLVGQTINDIFFFRNRLGFLAGENIVMSRTAKYFNLYPASVANLSDDDPIDVAVSHNRISILKYAVPFSEELLLWSDQAQFVLGANGILSAKSVELNLTTEFDVYDNARPFGVGRNIHFASPRAAFTSINRYYAVQDVSAVKNAEDITAHVPSYIPNGVFSIHGSSTENYVSVLTEGDPSKVFLYKFLYLDEQLRQQSWSYWDFGDNVEILAASSIGSTMYVMARNGFSTYIVSLSFKKATVDFTQEPYRIYLDHKKVYTVPTGTYNDALYETTLDIRDIYGMNFLKGNFSVVESDGRVETFVTPENGWVNDPHVTMSGNKEGAVLVCGFNYEFRYVFSKFLIKKTADDGTTSTEDSGRLQLRRAWVNYQETGAFTVDVENTSRVFTYIMAGARINSAALKAGTLNLGTGQFRFPVSGNALYNTVTIHSDTPTPLAIIGAGWEGNYTRRTSGI
Physico‐chemical
properties
protein length:802 AA
molecular weight: 88510,89370 Da
isoelectric point:5,39535
aromaticity:0,11222
hydropathy:-0,24090

Domains

Domains [InterPro]
IPR058003
TTP
1–802
IPR058003
UKH49714.1
1 802
Architecture
TTP
TTP 1-802
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
UKH49714.1
1 802
Domain Start End Length (AA) Confidence
N-terminal 1 190 190 0,8879
Central domain 191 389 200 0,1337
C-terminal 390 802 412 0,2060
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-190
Central
191-389
C-terminal
390-802

Taxonomy

  Name Taxonomy ID Lineage
Phage Rahnella phage Sarma103
[NCBI] 		2910780 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Rahnella woolbedingensis
[NCBI] 		1510574 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
UKH49714.1 [NCBI]
Genbank nucleotide accession
OL856139 [NCBI]
CDS location
range 24344 -> 26752
strand +
CDS
ATGGCTCTCATTTCACAAAGCATTAAAAACCTGAAGGGAGGCGTGAGCCAACAGCCAGACATCTTACGGTTCCCTGACCAAGGTGCCGCTCAGATTAATGGCTGGTCTTCAGATAACGAAGGGACTCAGAAACGGCCTCCGAGTGTGTTCCGTAAGGTCATCGCAGGACAGGGTGACCTCGGAGTCAAACCTCTGGTTCACCTCATTAACCGTGATGCAGTCGAGCAGTACTACGCTGTGTTCACTGGTAGTGACGTCCGTGTGTTTGGTCTTGATGGGACTGAGTATACTGTGCGCGGTGACAAGTCATATGTCCAAGTGGCTAACCCTCGTGTTGACTTAAGGATGATTACCGTGGCTGACTACACGTTCGTTGTGAACCGTAATGTAGTGGTTACCAATAACGATGACCAGAGCAATGGTGGCTCGTTTAATGACAAGCAGGATGCTTTGATTAACGTCCGTGGTGGTCAGTATGGGCGAGTTCTTGAGGTGACCGTCAATGGTGTCCTCGTGGCTAAGTTTGAGATTCCAGATGGTTCTAACCCTGTGGACTCAAAGAGTACTGATGCTCAGTTCATTGCCAAGACTCTGGCTGACCAGATGATGGGCGTAGGGACTCTACCTGCCGATGTCACCAAGTTGCCTACAGGGTGGACTGCAACGGTCGGTAATGGGTACATCCACATCGTAGCACCTTCAGGTTCACAGATTGACTCCCTGAAGGCTCAGGATGGGTTCGCTAACCAGTTAATCGCAGCGGTAACCCACTACAGCCAGTCGTTCACTAAGTTGCCTGTAGAGGCTCCTAATGGCTACAAGGTGAAGATTATGGGTGACACCTCCAAGACTGCTGACCAGTATTACGTTGAGTACGACACAACACGTAAGGTCTGGCGGGAGACTATTGGGTGGAACGTCTCACAGACCCTGACTGAATCAACCTTACCGTGGACTCTGGTTCGTGCCGCCGATGGTCAGTTCGACTTTGGGACACACTCTTGGTCTCCTCGTGAGTCTGGTGATGATGTGACTAACCCTCACCCATCTCTGGTAGGTCAGACAATCAATGACATCTTCTTCTTCAGGAACCGCTTAGGTTTCCTTGCAGGCGAGAACATTGTTATGTCGCGCACCGCTAAGTATTTCAACCTGTACCCTGCGAGTGTTGCCAACTTGTCTGATGATGACCCAATTGACGTGGCAGTAAGTCACAACCGAATCAGTATCCTGAAGTATGCCGTGCCGTTCTCCGAAGAGTTGCTGCTATGGTCTGACCAAGCTCAGTTCGTTCTGGGGGCGAATGGTATCCTATCAGCGAAGTCTGTAGAGTTGAACCTGACCACTGAGTTCGATGTGTATGACAATGCGAGACCTTTTGGTGTTGGGCGTAATATCCACTTTGCGTCACCTCGTGCTGCCTTTACGTCCATCAATCGCTACTATGCGGTACAGGATGTTAGTGCCGTGAAGAACGCTGAGGACATCACAGCCCACGTGCCGAGCTACATCCCTAATGGTGTGTTCTCTATTCATGGCTCGTCTACTGAGAACTATGTCAGCGTGTTGACCGAGGGCGACCCTTCGAAGGTGTTCCTCTACAAGTTCCTCTATCTGGATGAACAGTTACGCCAGCAATCATGGTCGTACTGGGACTTCGGGGACAACGTTGAGATTCTCGCAGCCAGCTCTATCGGTTCCACAATGTACGTTATGGCTCGTAACGGGTTCTCGACATACATCGTATCCTTGAGCTTCAAGAAGGCCACAGTAGACTTCACTCAGGAACCTTACCGAATCTACCTCGACCACAAGAAGGTGTATACAGTTCCCACTGGGACGTATAATGATGCTCTCTATGAGACAACCCTCGACATCCGTGACATCTACGGAATGAACTTCCTCAAGGGTAACTTCTCTGTGGTTGAATCAGATGGGCGAGTAGAGACCTTTGTGACTCCTGAGAATGGCTGGGTGAACGACCCCCACGTTACCATGAGCGGGAACAAGGAGGGTGCTGTTCTGGTCTGTGGGTTCAACTACGAGTTCCGCTATGTGTTCTCTAAGTTCCTCATTAAGAAGACTGCCGATGATGGCACGACTTCCACTGAGGACTCAGGTCGGTTGCAGTTACGTCGAGCTTGGGTGAACTATCAGGAGACCGGTGCTTTCACTGTGGACGTTGAGAACACTTCACGTGTCTTCACTTACATAATGGCTGGCGCTCGGATTAACTCTGCGGCTCTCAAGGCTGGCACTCTGAACTTAGGGACTGGACAGTTTAGGTTCCCAGTGAGTGGTAACGCTCTGTACAACACTGTGACCATCCACTCAGACACTCCAACGCCTCTGGCAATCATTGGTGCTGGCTGGGAGGGTAACTATACTCGCCGGACTTCCGGTATCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
893d3341063a1c8e4bb72c324f4ddd45c999762247c72437db18bd6fd41bc968
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,3005
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete genome sequence of Rahnella phage Sarma103 Dislers,A., Zrelovs,N. and Kazaks,A. 2012-10-15 — GenBank