Protein

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Genbank accession
AMD43389.1 [GenBank]
Protein name
hypothetical protein
RBP type
TSP
Evidence DepoScope
Probability 1,00
Protein sequence
MSTPQFYCWDDDGSPARNLSGNMQNRLKQILVPCLVTGYGSKTGAGWTVGHEHPNGFSLINADGNVVNFVSNLPAQAPYPAMNSGVIHIYAAESLIDTSSAIIDGANLCSGTYRKGLSELSNYPRHDLSYANYSMIDNLSTLQWVLVADNKTFILNCSTAPSSSNSSVSYCFTLYAGKSLLDTEFMSNFVVLGGNISNYSSYGYPYAFCVGYSSPINPSTGLSERVEVGTQPYRSTYNNYSSAQTTKPLSRLNLQQPRLFYGNDFVGRLRGVVYDDVLRSVYGWEEHLKVLGFSGANFTDRGKLALIDGYNYAFARSISGNSILTDNPAFW
Physico‐chemical
properties
protein length:331 AA
molecular weight: 36266,00330 Da
isoelectric point:5,93640
aromaticity:0,12689
hydropathy:-0,19849

Domains

Domains [InterPro]

No domain annotations available.

Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AMD43389.1
1 331
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,0742
Central domain 11 209 200 0,0029
C-terminal 210 331 121 0,9985
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-209
C-terminal
210-331

Taxonomy

  Name Taxonomy ID Lineage
Phage Pseudomonas phage ZC03
[NCBI] 		1622115 Uroviricota > Caudoviricetes > Schitoviridae > Zicotriavirus ZC03 >
Host Pseudomonas aeruginosa
[NCBI] 		287 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Pseudomonadales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AMD43389.1 [NCBI]
Genbank nucleotide accession
KU356690 [NCBI]
CDS location
range 2107 -> 3102
strand +
CDS
ATGAGCACACCGCAGTTTTACTGTTGGGACGATGACGGTAGTCCGGCTCGCAATTTATCAGGCAATATGCAAAATCGACTTAAACAAATATTGGTGCCGTGCTTAGTGACAGGATACGGCAGCAAGACAGGTGCTGGTTGGACGGTTGGACATGAGCATCCAAATGGATTTTCATTGATAAATGCTGACGGGAATGTAGTTAATTTTGTCAGTAATTTGCCAGCACAAGCGCCATATCCTGCAATGAACTCAGGGGTTATACATATTTATGCGGCTGAGTCTTTGATAGATACCAGCAGTGCCATTATTGATGGCGCTAATTTATGTAGCGGTACATATAGGAAAGGTTTATCAGAATTGTCTAACTATCCTAGGCATGATCTTTCGTATGCTAATTATTCAATGATTGATAATCTTTCAACACTACAGTGGGTGCTAGTAGCTGATAATAAAACATTTATATTAAATTGTAGTACTGCTCCTAGCAGTAGTAATAGTAGTGTTAGTTATTGTTTTACTCTGTATGCTGGAAAATCTTTGTTAGACACTGAATTCATGAGTAATTTTGTAGTGTTGGGGGGGAATATTTCAAATTACTCCTCATATGGTTACCCATACGCTTTTTGCGTCGGTTATAGCTCCCCTATAAATCCATCAACTGGTTTATCTGAGCGTGTAGAAGTGGGTACTCAACCATATAGGTCTACATATAATAATTATTCCTCTGCGCAAACAACCAAGCCGCTTTCTCGTCTCAATCTTCAGCAACCACGATTATTTTATGGCAATGATTTTGTTGGTCGTTTACGTGGTGTTGTGTATGACGACGTATTACGCAGCGTATACGGCTGGGAAGAACACTTAAAAGTACTTGGCTTCAGCGGTGCAAATTTTACTGATCGAGGTAAGTTGGCTTTAATTGATGGATATAATTATGCCTTCGCACGTAGTATCTCAGGTAACTCAATCCTCACTGATAACCCGGCGTTTTGGTGA

Genome Context

Genome Context

Tertiary structure

PDB ID
f494bfc97a26c4c1b512c902c85f00733d1189ab5d4b7d95358d886cfe9adf01
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6184
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Three novel Pseudomonas phages isolated from composting provide insights into the evolution and diversity of tailed phages Amgarten,D., Martins,L.F., Lombardi,K.C., Antunes,L.P., de Souza,A.P.S., Nicastro,G.G., Kitajima,E.W., Quaggio,R.B., Upton,C., Setubal,J.C. and da Silva,A.M. 2017 28472930 GenBank