Protein

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Genbank accession
AZF88573.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence Phold
Probability 1,00
TSP
Evidence DepoScope
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,89
TSP
Evidence RBPdetect2
Probability 0,95
Protein sequence
MTIPKLTPYTGEVANPDGSQTQSEFTTNMFNQLSYEANLAAELDATIDGMNNAVDEVSQNTAIAESSANAAEAAASSAGYQGLWPDTDGSALKGETWQTQVGGTPTGEYYTALQNTSVDPVGDDVNWKVDVSGSYVNQSQEELINGSLFPVSGTVKNGDIVEPGTTHLRALVGGQPVVVSMSPISTGVVSLLTETSAKIGATSVTFEVETVKNFQGIQSMIDYPYHSVNSKVKTGATVWKITTSTKGWATSTTGLYALPLNGVWLTDAGADPLNGNDASDAMDLMLANFNSDNKRRFTTVLGGGDFNFSRQLALTSSHGRFRMSGGAATITATANMDSLITWPHIDGPSIKDIQFKLGSGITMNNAIIDGGYQPGDSNKCIRTKLRNLSAFNIEGSPRFIRMTQEWEFKLENIRSDHDVSGQTGTNIQLVSCVNGQIKTPEVGYSAVGIQFSKSADVSYQCEGIDLVSPVTTFAAIALKGDNITSLKVTGGVLDFCLTRAWEFTNGSDVSFFGTWFANRSDSAGSGSFGISQPTFNKIKLFGCHFVNNHPTNTWNSLSLNSPGCKLFGNTHEGNVATGLILSDCEHFGNSFIDSTRTKAITQVQSAVVGTGNAAIHTIESGENQNSADKFLSRLEFSAPQINAASKFQIDIFRGAIADQIYAQLGWNGAYKFKFEMASGDIRFLTPGRGIILTSPDGLTTKLVRLSNAGSLELI
Physico‐chemical
properties
protein length:714 AA
molecular weight: 76176,92140 Da
isoelectric point:4,97213
aromaticity:0,08543
hydropathy:-0,18193

Domains

Domains [InterPro]
DC_0090
STR
1–709
DC_0090
Coil
Unmapped
40–60
Coil
AZF88573.1
1 714
Architecture
STR
STR 1-709 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
AZF88573.1
1 714
Domain Start End Length (AA) Confidence
N-terminal 1 279 279 0,9938
Central domain 280 597 319 0,9920
C-terminal 598 714 116 0,8994
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-279
Central
280-597
C-terminal
598-714

Taxonomy

  Name Taxonomy ID Lineage
Phage Vibrio phage P23
[NCBI] 		2488664 No lineage information
Host Vibrio sagamiensis
[NCBI] 		512650 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Vibrionales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
AZF88573.1 [NCBI]
Genbank nucleotide accession
MK097141.1 [NCBI]
CDS location
range 3496 -> 5640
strand -
CDS
ATGACCATTCCAAAGTTAACGCCATACACTGGAGAAGTCGCAAATCCAGACGGCAGCCAAACTCAATCAGAGTTTACCACCAATATGTTTAATCAGTTGAGCTATGAAGCCAATTTAGCAGCCGAGCTTGACGCGACAATCGACGGAATGAATAACGCAGTCGATGAGGTAAGCCAGAATACTGCTATCGCAGAAAGTTCAGCCAATGCAGCGGAAGCGGCAGCATCTTCCGCGGGCTATCAAGGTTTATGGCCTGACACTGACGGTAGTGCGTTAAAAGGCGAGACATGGCAAACACAAGTTGGTGGTACACCTACTGGAGAATATTACACAGCATTACAAAACACTAGCGTTGACCCTGTTGGGGATGATGTTAATTGGAAGGTTGATGTCAGTGGTAGTTATGTTAATCAATCTCAAGAAGAATTAATTAACGGTAGTTTGTTTCCTGTTAGTGGAACCGTTAAAAATGGCGATATTGTTGAACCTGGAACCACACACCTCCGCGCATTGGTTGGTGGTCAACCTGTAGTAGTGTCAATGTCACCAATTTCAACAGGGGTTGTTAGTTTATTAACCGAAACTAGCGCAAAGATAGGTGCTACAAGCGTCACTTTTGAAGTGGAGACAGTAAAGAATTTCCAAGGCATTCAATCTATGATTGATTATCCATACCATTCCGTAAATAGCAAAGTTAAGACAGGAGCTACAGTATGGAAAATTACAACTAGCACAAAGGGCTGGGCAACAAGTACAACTGGTTTATATGCTCTACCACTAAATGGTGTTTGGCTTACAGATGCTGGAGCAGACCCACTCAATGGTAATGATGCAAGTGACGCAATGGATCTTATGCTTGCTAACTTTAATTCAGACAACAAACGTAGATTTACTACAGTTCTTGGTGGTGGTGATTTTAATTTTTCAAGGCAGTTGGCACTAACGTCATCTCATGGTCGTTTTAGAATGTCTGGTGGTGCAGCGACAATTACCGCCACTGCAAACATGGATAGTCTAATAACATGGCCGCACATAGATGGGCCAAGCATTAAAGACATTCAGTTCAAGCTTGGTTCGGGTATCACAATGAATAACGCCATTATTGATGGTGGATATCAGCCTGGTGATAGTAATAAATGCATTAGAACCAAGCTAAGAAATTTAAGTGCATTCAATATAGAAGGCTCACCGCGATTTATTCGAATGACGCAAGAATGGGAATTTAAATTAGAAAACATCCGTTCAGACCATGACGTTTCAGGTCAAACCGGAACAAATATCCAACTAGTATCTTGTGTCAACGGTCAGATAAAAACGCCAGAGGTTGGCTATAGTGCTGTTGGTATCCAGTTCAGCAAGTCGGCAGATGTGTCTTATCAATGTGAAGGAATTGATTTAGTATCGCCAGTTACTACATTTGCAGCTATTGCACTTAAGGGTGACAATATAACTTCTCTCAAGGTCACGGGTGGTGTACTTGACTTCTGTCTAACTAGGGCATGGGAGTTCACTAACGGTTCGGATGTTTCATTCTTCGGGACATGGTTTGCCAATAGGTCAGATTCGGCTGGTTCTGGTTCTTTCGGGATTAGCCAACCAACATTTAATAAAATAAAATTATTTGGGTGCCACTTTGTAAATAATCACCCAACAAATACATGGAATTCTCTTTCACTAAATAGCCCAGGGTGTAAGTTATTTGGCAATACACATGAAGGCAACGTTGCGACTGGGTTGATACTCTCTGATTGCGAACACTTTGGAAACAGTTTTATTGATTCAACAAGAACAAAGGCTATAACTCAGGTTCAGTCAGCTGTAGTTGGTACTGGTAATGCTGCGATTCATACTATTGAAAGCGGTGAGAATCAAAATTCAGCAGACAAATTTCTTAGTAGGTTAGAATTTTCTGCACCACAAATTAACGCTGCATCTAAATTTCAGATTGACATTTTTAGGGGTGCGATTGCAGACCAAATTTATGCTCAGCTAGGATGGAACGGCGCTTACAAATTTAAGTTCGAAATGGCAAGTGGCGACATTAGATTTCTTACTCCGGGGAGAGGTATTATACTTACATCTCCAGACGGTCTAACAACCAAGTTGGTGAGGTTATCAAATGCCGGATCGTTAGAGTTAATTTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
4b65b6c976fd25bdfea35025a80cddbba695a463468184f8681228bfce1413fb
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,7586
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Complete Genomic Sequence of Bacteriophage P23: A Novel Vibrio sagamiensis Phage Isolated from Yellow Sea, China Liu,Y. 2019-08-16 — GenBank