Protein

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Genbank accession
YP_008058818.1 [GenBank]
Protein name
BppU family baseplate upper protein
RBP type
TF
Evidence RBPdetect
Probability 0,88
TF
Evidence RBPdetect2
Probability 0,89
Protein sequence
MDFTRRENYKLMSNLEKSVAINLENTAHYENISNLDITFRTGESDSSVLLFNIIKNNQPLLLSEENIKARIAIRGKGVMVVAPLEILDPFKGILKFQLPNDVIKRDGSYQAQVSVAELGNSDVVVVERTITFNVEKSLFSKIPSETKLHYIVEFQELEKTIMDRAKAMDEAIKNGEDYASLIEKAKEKGLSDIQIAKSSSIDELKQLANSRISDLENKAQAYSRTFDEQKRYMDEKHEAFKQSVNSGGLVTSGSTSNWQKAKITKDDGKIMQITGFDFNNPEQRIGDSTQFIYVSQAINYPRGASTNGTVEYLVVTSDYKRMTYRPNGTNKVFVKRKEVGSWSDWSELALNDYNTPFETVQNAQSKANTAESNAKLYTDDKFNKRYSVIFDGTANGVGSTLYLNESLDQFILLIFYGTFPGGDFTEFGNPFGGGKISLNPSNLPDNDGDGGGVYEFGLTKSSRTSLTISNDVYFDLGSRRGSGANANRGTINKIIGVRK
Physico‐chemical
properties
protein length:499 AA
molecular weight: 55648,61130 Da
isoelectric point:5,75588
aromaticity:0,09419
hydropathy:-0,51623

Domains

Domains [InterPro]
G3DSA:2.60.40.3350
ATT
17–141
G3DSA:2.60.40.3350 DC_0143 cd19958 DC_0151
IPR018913
ATT
17–163
IPR018913 Coil cd19958 Coil
YP_008058818.1
1 499
Architecture
ATT
STR
STR
RBD
ATT 17-163 | STR 164-269 | STR 290-349 | RBD 350-499
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Taxonomy

  Name Taxonomy ID Lineage
Phage Staphylococcus phage StauST398-2
[NCBI] 		1277672 Uroviricota > Caudoviricetes > Triavirus >
Host Staphylococcus aureus
[NCBI] 		1280 cellular organisms > Bacteria > Bacillati > Bacillota > Bacilli > Bacillales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_008058818.1 [NCBI]
Genbank nucleotide accession
NC_021323 [NCBI]
CDS location
range 38920 -> 40419
strand +
CDS
ATGGACTTTACACGAAGGGAGAATTATAAGTTAATGAGTAATTTAGAGAAATCTGTAGCTATAAATTTAGAAAATACAGCGCATTATGAAAATATTTCAAATCTAGATATAACTTTTAGAACAGGAGAGAGTGATTCTTCTGTTCTTCTTTTTAATATCATTAAAAATAATCAACCGTTATTACTGAGTGAAGAAAATATCAAAGCACGAATAGCGATTCGAGGTAAAGGAGTAATGGTAGTTGCTCCACTAGAAATATTAGATCCATTTAAAGGTATTTTAAAATTTCAATTACCTAATGATGTAATTAAAAGAGATGGAAGTTATCAAGCTCAAGTTTCGGTTGCAGAATTAGGTAATTCAGACGTGGTAGTTGTAGAGAGAACTATCACATTTAACGTTGAAAAAAGTTTGTTTAGCAAGATTCCCTCTGAAACAAAACTACACTATATTGTTGAGTTTCAAGAATTAGAAAAAACTATTATGGATCGCGCGAAAGCAATGGACGAGGCTATAAAAAATGGTGAGGATTATGCGAGTCTGATTGAAAAAGCTAAAGAAAAAGGTCTATCAGATATTCAAATAGCAAAATCTTCAAGTATTGATGAATTAAAGCAACTTGCTAATAGCCGTATATCTGATTTGGAAAATAAAGCGCAAGCATATTCAAGAACATTCGATGAGCAAAAGCGATATATGGATGAGAAACATGAAGCCTTCAAGCAGTCAGTGAATAGTGGTGGTTTGGTTACAAGTGGCTCAACTTCAAATTGGCAAAAAGCTAAGATTACTAAAGATGATGGTAAGATAATGCAGATTACTGGATTTGATTTTAATAATCCAGAACAAAGAATAGGCGATTCAACCCAATTTATTTATGTTTCGCAAGCTATAAATTATCCAAGAGGCGCAAGCACTAATGGTACTGTCGAATATTTAGTAGTAACTTCCGACTACAAACGTATGACATATCGTCCAAATGGTACAAATAAAGTATTTGTTAAGAGAAAAGAAGTGGGTTCGTGGTCTGATTGGTCAGAATTAGCGCTTAATGATTACAACACACCTTTTGAAACTGTTCAAAACGCGCAATCAAAGGCTAACACGGCTGAAAGCAATGCCAAACTATACACAGATGACAAGTTTAATAAAAGATATTCAGTTATTTTTGATGGGACGGCAAATGGCGTTGGCTCAACATTATATCTTAATGAAAGTTTAGATCAATTTATTTTGTTAATTTTTTATGGAACTTTTCCAGGTGGAGATTTTACTGAGTTTGGCAACCCCTTTGGTGGCGGAAAAATTTCATTGAACCCATCAAATTTACCGGATAATGACGGTGACGGTGGAGGCGTTTATGAGTTTGGATTAACTAAATCTAGTCGTACATCATTAACTATATCAAACGATGTTTATTTTGACTTAGGAAGTCGAAGAGGTTCTGGTGCAAATGCAAATAGAGGAACAATCAACAAAATTATAGGAGTGAGAAAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
d092554e48b91d6ed759cff27040290a61668227c6eb7c141786f50a7a752705
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,8067
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Bacteriophage encoded immune escape in Staphylococcus aureus CC398 van der Mee-Marquet,N., Valentin,A.-S., Corvaglia,A.-R., Bertrand,X., Girard,M., Kluytmans,J., Donnio,P.-Y., Quentin,R., Schrenzel,J. and Francois,P. 2013-08 — GenBank