Protein

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Genbank accession
YP_006383521.1 [GenBank]
Protein name
tail fiber protein
RBP type
TF
Evidence GenBank
Probability 1,00
TF
Evidence Phold
Probability 1,00
TSP
Evidence RBPdetect
Probability 0,75
Protein sequence
MSEIGLNINVDSYNNEGIKTIKGNNNAEIYKLYILKNKRRLSLVGKTVKLGYVMVGTTNGDVIENLNITNAEQGEITFPITNSISKRDGVYSCQLAILGEGDFLEHTATFTLTVENNIFSDITKAIADSKDFTYLERILEEASKLSEKLKENTSSATNANSNLESNITEANNINSKLLENTSTATSLNKNLESNIDLAKEVKETIKDLDNKNIEATEKIQTLTGLNSKAEELSNNINKGLPLNSELVKNVESAKIANNELIATNNDAKAKKTDLDNSLEEAKKYISGLDGSKNPVQMQLDIDMLKNGLKSNQSLSYEGSSITAENTLEGRSEGMRIKGKNLQNIIKMSDFSLNKIGTLENNTFKINRTSSSQVTAIALGKKFLAKLKSNTVYTVMAKISNNTLTGEFALIHQYQNTMFTKNSVMIPRGFNGIVSKKFTTIDDISLGDRIEVNFQSVTGSIDIENFLILEGDHTNTFIDNYFEGLKSFGEEEKVEDKYKISILSHGKNLININNFKIVDTTGSMDIKTINESISIKMKKSQGWTTAGVFKLKVKPNTDYIFGRKIKVNAYGHGESTWGCGLITIKENAIQNARSLQEVGNPSREFPSGNGENIKTVKFNTGNCNYIGIFVKPTTAPVLENQLADFIISDLFLYESNNDYKYKIYKEYRKDILIKEPLHEDNYLYEDNGQVKVFKKQKQYTFTGDEDMELRFSQPTDNKLIRFGVKKDLGIKKDSLILCNRFKNIKYFVEEPNIFCHPNDLCVDLTMLKSDLTTPDIEGFKAWLKANPTTIIYQLATPVVEIVENCVDIDLDTFEEKTYFNILNSLPGSLDFKVPSNLGSSLQNLAKEVNNIWDVINNLLVPSIVKANGNLAMIKLNNNLK
Physico‐chemical
properties
protein length:879 AA
molecular weight: 98323,38940 Da
isoelectric point:5,86495
aromaticity:0,07509
hydropathy:-0,41547

Domains

Domains [InterPro]
G3DSA:2.60.40.3350
ATT
2–121
G3DSA:2.60.40.3350 Coil Coil DC_2224
G3DSA:2.60.40.3350
ATT
2–120
G3DSA:2.60.40.3350 Coil
IPR018913
ATT
13–140
IPR018913
DC_2224
STR
98–239
DC_2224
YP_006383521.1
1 879
Architecture
ATT
STR
ATT 2-140 | STR 141-447 |
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_006383521.1
1 879
Domain Start End Length (AA) Confidence
N-terminal 1 398 398 0,8495
Central domain 399 597 200 0,0601
C-terminal 598 879 281 0,5269
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-398
Central
399-597
C-terminal
598-879

Taxonomy

  Name Taxonomy ID Lineage
Phage Clostridium phage PhiS63
[NCBI] 		1187894 Viruses > Duplodnaviria > Heunggongvirae > Uroviricota > Caudoviricetes
Host Clostridium perfringens strain S63
[NCBI] 		164114 Actinomycetota > Actinomycetes > Kitasatosporales > Streptomycetaceae > Streptomyces >

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_006383521.1 [NCBI]
Genbank nucleotide accession
NC_017978.1 [NCBI]
CDS location
range 17184 -> 19823
strand +
CDS
ATGAGTGAAATAGGATTAAACATTAATGTTGATTCTTATAATAACGAAGGAATAAAAACAATAAAAGGTAACAATAATGCAGAAATCTATAAACTATATATCTTAAAGAATAAAAGAAGATTAAGTTTAGTAGGTAAGACTGTTAAACTTGGCTATGTAATGGTTGGGACAACAAATGGAGATGTAATAGAAAATTTAAATATTACAAATGCAGAGCAAGGAGAAATAACATTCCCAATAACTAATTCAATTTCTAAAAGAGATGGAGTTTATTCTTGCCAGCTTGCAATTTTAGGAGAAGGAGATTTTTTAGAACATACAGCTACATTCACTTTAACAGTAGAAAATAATATTTTTAGTGATATTACTAAAGCAATAGCAGATAGTAAAGACTTTACTTATTTAGAAAGAATATTAGAAGAAGCTAGTAAGCTAAGTGAAAAGTTAAAAGAAAACACTTCTAGTGCTACTAATGCAAATAGTAATTTAGAATCTAATATAACAGAAGCTAATAATATTAATTCTAAGCTCTTAGAAAATACTTCTACTGCTACTTCTTTAAATAAAAATTTAGAATCTAATATAGATCTAGCTAAAGAAGTTAAAGAAACTATAAAAGATTTAGATAATAAAAATATAGAAGCTACAGAGAAAATACAAACACTAACTGGATTAAATTCTAAAGCTGAAGAACTATCAAATAATATAAATAAAGGACTACCTTTAAATTCAGAATTAGTTAAAAATGTTGAATCAGCTAAAATAGCAAACAATGAATTAATAGCAACTAATAATGATGCTAAAGCTAAGAAAACAGATTTAGATAATTCATTAGAAGAAGCTAAAAAATATATATCTGGACTAGATGGAAGTAAAAATCCAGTTCAAATGCAGTTAGATATAGATATGTTAAAAAATGGACTTAAATCAAATCAATCTTTAAGTTATGAAGGAAGTTCCATTACCGCTGAAAATACTCTTGAAGGCAGAAGCGAAGGTATGCGAATTAAGGGAAAAAATTTACAGAATATAATTAAAATGAGTGATTTTAGCTTAAACAAAATTGGAACATTAGAAAATAATACTTTCAAAATAAATAGAACTAGTAGTTCACAAGTAACAGCTATAGCATTAGGAAAGAAATTTCTTGCAAAATTAAAATCAAATACAGTTTATACTGTCATGGCTAAAATATCTAATAATACACTAACAGGAGAGTTCGCCTTAATTCATCAGTACCAGAATACAATGTTTACTAAAAATTCTGTAATGATTCCAAGAGGCTTTAATGGCATAGTATCTAAAAAATTCACTACAATTGATGACATTTCTTTAGGAGATAGAATAGAGGTAAACTTTCAATCAGTTACTGGATCAATTGATATTGAGAATTTTCTTATATTAGAGGGGGATCACACCAATACTTTTATTGATAATTATTTTGAAGGGTTAAAAAGCTTTGGAGAAGAAGAAAAGGTTGAAGATAAGTATAAAATTAGTATTTTATCTCATGGTAAGAATTTAATAAATATTAATAATTTTAAGATTGTAGATACAACTGGTTCTATGGATATAAAAACAATAAATGAATCTATAAGTATAAAAATGAAAAAATCTCAAGGGTGGACAACCGCTGGAGTGTTTAAATTAAAAGTTAAGCCTAACACGGATTATATATTTGGCAGAAAAATTAAGGTAAACGCTTATGGACATGGGGAATCAACTTGGGGATGTGGATTAATTACAATAAAAGAAAATGCAATTCAGAACGCAAGAAGTCTCCAAGAAGTTGGTAATCCTTCAAGAGAATTTCCTAGTGGTAATGGTGAAAATATAAAAACAGTAAAATTTAATACTGGTAATTGTAACTATATAGGAATATTTGTAAAACCAACAACAGCTCCAGTTTTAGAAAATCAATTAGCTGATTTTATTATTTCGGATTTATTTCTATATGAATCAAATAATGATTATAAATATAAAATATATAAAGAATATAGAAAAGATATTTTAATTAAAGAGCCACTTCATGAAGATAATTATCTTTATGAAGATAATGGACAAGTTAAGGTTTTTAAAAAACAGAAACAATATACTTTTACTGGTGATGAAGACATGGAGTTAAGATTTTCTCAACCTACCGACAACAAGTTAATTCGTTTTGGTGTAAAGAAAGACCTGGGAATAAAGAAAGACAGTCTAATATTATGCAATAGATTTAAAAATATCAAGTATTTTGTTGAAGAACCAAATATTTTTTGTCATCCCAATGACTTATGTGTTGATTTGACAATGCTAAAATCAGATTTAACCACACCCGATATTGAAGGTTTCAAAGCATGGTTAAAAGCTAATCCAACTACAATAATTTATCAACTCGCTACGCCAGTAGTAGAGATTGTAGAAAATTGTGTAGATATAGATTTGGACACTTTTGAAGAAAAAACTTATTTTAATATATTAAACTCACTTCCAGGTAGTTTAGATTTTAAAGTACCTTCAAACCTAGGAAGCTCTTTGCAGAATTTAGCTAAAGAAGTTAATAACATTTGGGATGTTATTAATAATTTATTAGTACCAAGCATAGTAAAAGCTAATGGAAATCTTGCTATGATTAAATTAAATAATAATTTAAAATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
940d624b03695659f7df20ab80647c118d41af982bd0ab264da0b13d1a47fa38
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,6527
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
Clostridium perfringens bacteriophages PhiS9 and PhiS63: different genome structures and attB insertion sites Loessner,M.J., Zimmer,M., Lurz,R., Klumpp,J., Born,Y. and Kim,K.-P. 2012-04 — GenBank