Protein

View in Explore
Genbank accession
YP_009852343.1 [GenBank]
Protein name
receptor binding tail protein
RBP type
TSP
Evidence DepoScope
Probability 0,99
TSP
Evidence RBPdetect
Probability 0,89
Protein sequence
MSFFAGKFSDGKTVLSLNAANGGDINQHYSPNTNSIFHSDMPFVLVDGTYEAALGDAGNGYFVCQMPWDIINIKSNDPGRVILTAIEINGTHRGFLNGTQSQVGQFLTFFEDQPRAGAELAITSAFAIGDSLAHGTYIYNGSLGHEESIARQGTGGTLLQSSGFQIFRPGGVSAGEAISRAWSLMGFPTGVSTVPLDGGNADYWEPNWQAPIGSAGRGHDWFYVCSSNIRGFAGKKGVLPDNVNVLYQSPAYPEKIYVCRGSTSNMAAQSARKVYVQDWYNVTPTKVIWYVLNLRYSNGSMGVSGNPFTGSDILISPSNFTIKGVSLPNTGYKFINQNAFGNLGYRPDMEYVGNNAAYTGVFGDNTARCEFIGSSNGGLWSPVNYGGAASQISLYKFGVGKQWYVDTNTNSIGNEHGPVWSPSTVPLRLFPGNVASTYVGDDITPSYPGAGDFYTPLATVWLGLPNAHSTVILTTEVIMGNLNTAGMPVRTYGGSAWQVQGRRQQSYTAGDGVFHQILTLPPGYLVPYHSTTSYSYTQTWASRPDEFAFRRNGYIYTIKNLGNGNVELGVIIHAAEAAAVFLPRLRVTVQRLT
Physico‐chemical
properties
protein length:593 AA
molecular weight: 64019,71560 Da
isoelectric point:6,41470
aromaticity:0,12479
hydropathy:-0,16644

Domains

Domains [InterPro]
IPR059609
RBD
1–593
IPR059609
YP_009852343.1
1 593
Architecture
RBD
RBD 1-593
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YP_009852343.1
1 593
Domain Start End Length (AA) Confidence
N-terminal 1 10 10 0,5565
Central domain 11 242 233 0,7803
C-terminal 243 593 350 0,7342
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-10
Central
11-242
C-terminal
243-593

Taxonomy

  Name Taxonomy ID Lineage
Phage Salmonella phage 1-29
[NCBI] 		2601628 Uroviricota > Caudoviricetes > Demerecviridae > Epseptimavirus > Epseptimavirus ev129
Host Salmonella enterica subsp. enterica
[NCBI] 		59201 Bacteria > Proteobacteria > Gammaproteobacteria > Enterobacteriales > Enterobacteriaceae > Salmonella

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YP_009852343.1 [NCBI]
Genbank nucleotide accession
NC_048811 [NCBI]
CDS location
range 104741 -> 106522
strand -
CDS
ATGAGTTTTTTCGCAGGAAAATTTAGTGATGGTAAAACTGTATTATCTCTAAACGCTGCTAATGGTGGTGATATAAATCAGCACTACTCTCCAAATACTAATAGTATCTTCCACTCAGATATGCCATTTGTCCTAGTTGATGGGACTTACGAGGCCGCTCTAGGTGATGCAGGCAATGGGTATTTTGTATGTCAAATGCCTTGGGATATTATAAATATTAAATCCAATGATCCTGGTAGAGTTATACTAACTGCTATTGAGATAAACGGTACTCATAGGGGTTTCCTTAATGGTACACAATCTCAGGTTGGCCAGTTTTTAACATTCTTTGAAGACCAACCACGTGCTGGTGCTGAATTGGCAATAACATCTGCCTTTGCAATCGGTGATAGTTTAGCTCATGGTACCTATATTTATAATGGTAGCCTAGGTCATGAGGAATCTATTGCTAGACAAGGAACTGGCGGTACTTTGCTACAATCTTCCGGTTTCCAGATCTTTAGACCTGGTGGTGTTTCCGCAGGTGAAGCTATTTCCAGAGCCTGGAGTCTTATGGGTTTTCCAACTGGTGTCTCTACTGTTCCTTTAGATGGTGGTAACGCAGATTATTGGGAACCTAACTGGCAGGCGCCTATTGGTTCTGCTGGTAGAGGCCATGATTGGTTTTATGTTTGTAGTTCTAATATTCGTGGCTTCGCAGGTAAAAAAGGCGTACTACCAGATAACGTAAACGTTCTTTACCAATCTCCTGCATACCCAGAAAAAATATATGTTTGTAGAGGTTCTACTTCTAATATGGCTGCTCAGTCTGCTAGAAAGGTATATGTACAGGACTGGTATAACGTTACGCCAACTAAGGTTATTTGGTATGTGCTAAATCTGCGCTATTCTAATGGTAGTATGGGAGTTTCTGGTAATCCATTTACCGGTTCAGATATCCTAATATCTCCATCTAACTTTACTATTAAAGGTGTTAGTTTACCAAATACAGGATATAAATTCATTAACCAGAATGCTTTCGGAAACTTAGGCTATCGCCCTGATATGGAGTATGTTGGTAATAACGCTGCGTATACCGGAGTTTTTGGTGATAATACTGCACGATGTGAATTTATCGGCTCTAGTAATGGCGGGTTGTGGTCTCCTGTTAACTATGGTGGTGCAGCTTCTCAAATTAGCTTATATAAATTTGGTGTAGGTAAACAATGGTATGTAGATACTAATACCAACTCCATTGGTAATGAACATGGACCTGTGTGGAGTCCTAGTACTGTACCCCTCAGGTTATTCCCAGGCAACGTTGCAAGTACTTATGTAGGGGACGATATAACTCCATCCTACCCTGGTGCTGGTGACTTCTACACACCTTTGGCCACAGTTTGGTTGGGATTACCAAATGCTCACTCTACTGTTATATTAACTACTGAAGTTATTATGGGTAATCTTAATACTGCTGGAATGCCTGTGCGTACTTACGGCGGTAGCGCTTGGCAGGTACAGGGTAGACGTCAACAAAGTTATACAGCTGGTGATGGTGTATTCCACCAGATTCTTACTCTGCCACCTGGATATCTAGTACCTTATCACAGTACAACTTCCTATAGTTATACACAAACTTGGGCTAGTAGGCCTGATGAGTTTGCTTTCCGTAGGAACGGATATATTTATACTATTAAAAACCTTGGTAATGGCAACGTTGAGTTGGGTGTTATCATTCACGCTGCAGAAGCGGCAGCTGTTTTCTTGCCAAGACTACGTGTAACAGTTCAACGCCTAACCTAA

Genome Context

Genome Context

Tertiary structure

PDB ID
4b46443411332963ab590a0e47623fc1f2907a155f64007b129edbb10770c4c1
ESMFold
Source ESMFold
Method ESMFold
Resolution 0,2787
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50