Protein

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Genbank accession
YAF79501.1 [GenBank]
Protein name
long tail fiber protein proximal connector
RBP type
TSP
Evidence RBPdetect
Probability 0,91
Protein sequence
MEKFMAEFGQGYVQTPFLSESNSVRYKISIAGSCPFSTAGPYVKFQDNPVGSQTFSAGLHLRVFDPSTGALVDSKSYAFSTSNDTTSAAFVSFMNSLTNNRIVAILTSGKVNFPPEVVSWLRTAGTSAFPSDSILSRFDVSYAAFYTSSKRAIALEHVKLSNRKSTDDYQTILDVVFDSLEDVGATGFPRRTYESVEQFMSAVGGTNNEIVRLPTSATISKLSDYNLIPGDVLYLKAQLYADADLLSLGTTNISIRFYNASNGYISSTQAEFTGQAGSWELKEDYVVVPENAVGFTIYAQRTAQAGQGGMRNLSFSEVSRNGGISKPAEFGVNGIRVNYICESASPPDIMVLPTQASSKTGKVFGQEFREV
Physico‐chemical
properties
protein length:371 AA
molecular weight: 40240,47940 Da
isoelectric point:5,27076
aromaticity:0,11321
hydropathy:-0,13288

Domains

Domains [InterPro]
DC_0912
STR
1–371
DC_0912
PS52031
LEC
22–192
PS52031
IPR039477
STR
58–126
IPR039477
YAF79501.1
1 371
Architecture
STR
STR 1-371
Legend: ATT STR RBD CBM LEC ENZ CHP LNK TAS TTP UNK Unmapped

Tail Spike Domain Segmentation

Tail Spike Domain Segmentation

This protein has been segmented into three structural domains: N-terminal, central domain, and C-terminal.

Domain Layout
N-terminal
Central
C-terminal
YAF79501.1
1 371
Domain Start End Length (AA) Confidence
N-terminal 1 67 67 0,6413
Central domain 68 266 200 0,4568
C-terminal 267 371 104 0,5035
Legend: N-terminal Central domain C-terminal
3D Structure with Domain Coloring

The structure is colored according to the domain segmentation: N-terminal (blue), Central (green), C-terminal (pink).

Domain Coloring
N-terminal
1-67
Central
68-266
C-terminal
267-371

Taxonomy

  Name Taxonomy ID Lineage
Phage Escherichia phage CBDS-06
[NCBI] 		3459902 Viruses > unclassified bacterial viruses >
Host Escherichia coli
[NCBI] 		562 cellular organisms > Bacteria > Pseudomonadati > Pseudomonadota > Gammaproteobacteria > Enterobacterales

Coding sequence (CDS)

Coding sequence (CDS)
Genbank protein accession
YAF79501.1 [NCBI]
Genbank nucleotide accession
PX104379 [NCBI]
CDS location
range 55497 -> 56612
strand +
CDS
ATGGAAAAATTTATGGCAGAGTTTGGACAAGGATATGTCCAAACGCCATTTTTATCGGAAAGCAATTCAGTAAGATATAAAATAAGCATAGCGGGTTCTTGCCCGTTTTCTACAGCAGGACCATACGTTAAATTTCAGGATAATCCTGTAGGAAGTCAAACATTTAGCGCAGGCCTTCATTTAAGAGTTTTTGACCCTTCCACCGGAGCATTAGTTGATAGTAAATCATATGCTTTTTCGACTTCAAATGATACTACATCAGCTGCTTTTGTTAGTTTCATGAATTCTTTGACGAATAATCGAATTGTTGCTATATTAACTAGTGGAAAGGTTAATTTTCCTCCTGAAGTAGTATCTTGGTTAAGAACCGCCGGAACGTCTGCTTTTCCATCTGATTCTATATTGTCAAGATTCGACGTATCATATGCTGCTTTTTACACTTCTTCTAAACGAGCTATTGCATTAGAACATGTTAAACTAAGTAATAGAAAAAGCACAGATGATTATCAAACTATTTTAGATGTAGTATTTGACAGTTTAGAAGATGTCGGAGCTACCGGGTTTCCAAGAAGAACGTATGAAAGTGTTGAGCAATTCATGTCAGCGGTTGGTGGAACCAATAACGAAATTGTGCGTCTACCAACTTCAGCTACTATAAGTAAATTATCTGATTATAATTTAATTCCTGGTGACGTTCTTTATCTTAAAGCCCAGTTATATGCTGATGCCGATTTACTTTCTCTTGGAACAACAAATATATCTATCCGTTTTTATAATGCATCTAACGGATATATTTCCTCGACACAAGCTGAGTTTACTGGACAAGCTGGGTCTTGGGAATTAAAGGAAGATTATGTAGTTGTTCCAGAAAATGCAGTTGGATTTACGATATATGCGCAGAGAACTGCTCAAGCGGGGCAAGGCGGTATGCGAAATTTAAGCTTTTCTGAAGTATCAAGAAATGGCGGAATTTCAAAACCTGCTGAATTTGGCGTCAATGGTATTCGTGTTAATTATATCTGTGAATCTGCTTCACCTCCGGATATAATGGTACTTCCTACACAAGCATCGTCTAAAACTGGTAAAGTGTTTGGGCAAGAATTTAGAGAAGTATAA

Genome Context

Genome Context

Tertiary structure

PDB ID
95d317ebd1f76b6b35c7f1faefa050a816986a8b88c8aaecbdd09d787f008b06
ColabFold
Source ColabFold
Method ColabFold
Resolution 0,7957
Oligomeric State monomer
Download PDB
Model Confidence
Very high
pLDDT > 90
High
90 > pLDDT > 70
Low
70 > pLDDT > 50
Very low
pLDDT < 50

Literature

Title Authors Date PMID Source
A machine learning approach to predict strain-specific phage-host interactions Camejo,P.Y., Leon,L.E., Rojas,F., Ossa,A., Hurtado,R., Tichy,D., Pieringer,C., Pino,M., Mora-Uribe,P., Ulloa,S., Norambuena,R., Tobar-Calfucoy,E., Aguilera,M., Rojas-Martinez,V., Cifuentes,O., Sabag,A., Cifuentes,N., San Martin,D., Infante,C., Cifuentes,P. and Pieringer,H. — — GenBank